Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lolD and NIAGMN_23915 overlap by 17 nucleotides NIAGMN_23915 and lolE are separated by 0 nucleotides lolE and NIAGMN_23925 are separated by 8 nucleotides NIAGMN_23925 and NIAGMN_23930 overlap by 4 nucleotides
NIAGMN_23910: lolD - lipoprotein-releasing system ATP-binding protein LolD, at 4,683,476 to 4,684,183
lolD
NIAGMN_23915: NIAGMN_23915 - Uncharacterized function, at 4,684,167 to 4,684,823
_23915
NIAGMN_23920: lolE - ABC transporter permease, at 4,684,824 to 4,686,134
lolE
NIAGMN_23925: NIAGMN_23925 - Outer membrane lipoprotein-sorting protein, at 4,686,143 to 4,686,931
_23925
NIAGMN_23930: NIAGMN_23930 - hypothetical protein, at 4,686,928 to 4,688,316
_23930
Position (kb) 4684
4685
4686
4687 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4684.537 kb on - strand, within NIAGMN_23915 at 4684.755 kb on - strand, within NIAGMN_23915 at 4685.994 kb on - strand, within lolE at 4686.579 kb on - strand, within NIAGMN_23925 at 4686.748 kb on - strand, within NIAGMN_23925 at 4686.910 kb on + strand at 4686.911 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,684,537 - NIAGMN_23915 0.56 -0.6 4,684,755 - NIAGMN_23915 0.89 +1.9 4,685,994 - lolE NIAGMN_23920 0.89 +0.8 4,686,579 - NIAGMN_23925 0.55 +1.3 4,686,748 - NIAGMN_23925 0.77 +2.9 4,686,910 + -2.9 4,686,911 - +2.4
Or see this region's nucleotide sequence