Strain Fitness in Escherichia coli ECRC102 around NIAGMN_23630

Experiment: Sodium-DL-Lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntNIAGMN_23625 and NIAGMN_23630 are separated by 122 nucleotidesNIAGMN_23630 and ydeI are separated by 332 nucleotidesydeI and NIAGMN_23640 are separated by 119 nucleotides NIAGMN_23625: NIAGMN_23625 - Uncharacterized protein H0150, at 4,615,872 to 4,624,253 _23625 NIAGMN_23630: NIAGMN_23630 - hypothetical protein, at 4,624,376 to 4,624,471 _23630 NIAGMN_23635: ydeI - TIGR00156 family protein, at 4,624,804 to 4,625,148 ydeI NIAGMN_23640: NIAGMN_23640 - protein hokC, at 4,625,268 to 4,625,480 _23640 Position (kb) 4624 4625Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4623.389 kb on + strand, within NIAGMN_23625at 4623.711 kb on + strandat 4623.711 kb on + strandat 4623.712 kb on - strandat 4623.813 kb on + strandat 4623.813 kb on + strandat 4623.887 kb on + strandat 4623.887 kb on + strandat 4623.889 kb on + strandat 4623.890 kb on - strandat 4623.963 kb on + strandat 4624.076 kb on + strandat 4624.131 kb on + strandat 4624.193 kb on + strandat 4624.227 kb on + strandat 4624.313 kb on + strandat 4624.314 kb on - strandat 4624.326 kb on + strandat 4624.327 kb on - strandat 4624.327 kb on - strandat 4624.327 kb on - strandat 4624.330 kb on - strandat 4624.334 kb on + strandat 4624.334 kb on + strandat 4624.334 kb on + strandat 4624.335 kb on - strandat 4624.335 kb on - strandat 4624.337 kb on - strandat 4624.360 kb on + strandat 4624.360 kb on + strandat 4624.381 kb on + strandat 4624.381 kb on + strandat 4624.412 kb on + strand, within NIAGMN_23630at 4624.412 kb on + strand, within NIAGMN_23630at 4624.413 kb on - strand, within NIAGMN_23630at 4624.438 kb on + strand, within NIAGMN_23630at 4624.438 kb on + strand, within NIAGMN_23630at 4624.439 kb on - strand, within NIAGMN_23630at 4624.479 kb on + strandat 4624.486 kb on + strandat 4624.506 kb on + strandat 4624.506 kb on + strandat 4624.595 kb on + strandat 4624.613 kb on + strandat 4624.655 kb on + strandat 4624.656 kb on - strandat 4624.656 kb on - strandat 4624.665 kb on + strandat 4624.667 kb on + strandat 4624.829 kb on - strandat 4624.916 kb on - strand, within ydeIat 4625.290 kb on - strand, within NIAGMN_23640

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
remove
4,623,389 + NIAGMN_23625 0.90 +0.1
4,623,711 + +2.0
4,623,711 + +0.3
4,623,712 - -0.4
4,623,813 + +0.3
4,623,813 + +0.5
4,623,887 + -1.1
4,623,887 + -3.3
4,623,889 + -1.0
4,623,890 - -2.2
4,623,963 + -0.3
4,624,076 + +1.8
4,624,131 + -0.1
4,624,193 + -0.5
4,624,227 + +3.5
4,624,313 + +0.5
4,624,314 - +0.1
4,624,326 + -0.6
4,624,327 - +0.3
4,624,327 - +0.2
4,624,327 - +0.1
4,624,330 - -1.0
4,624,334 + -0.7
4,624,334 + +0.4
4,624,334 + -0.2
4,624,335 - -2.6
4,624,335 - -0.3
4,624,337 - +0.2
4,624,360 + +0.6
4,624,360 + -1.5
4,624,381 + -0.0
4,624,381 + -2.2
4,624,412 + NIAGMN_23630 0.38 +0.3
4,624,412 + NIAGMN_23630 0.38 +0.0
4,624,413 - NIAGMN_23630 0.39 +0.1
4,624,438 + NIAGMN_23630 0.65 +0.2
4,624,438 + NIAGMN_23630 0.65 +2.1
4,624,439 - NIAGMN_23630 0.66 +0.2
4,624,479 + +0.5
4,624,486 + -0.9
4,624,506 + -0.8
4,624,506 + +0.1
4,624,595 + +0.8
4,624,613 + +0.2
4,624,655 + -2.3
4,624,656 - +2.2
4,624,656 - -1.0
4,624,665 + +0.8
4,624,667 + -0.6
4,624,829 - +2.8
4,624,916 - ydeI NIAGMN_23635 0.32 -0.7
4,625,290 - NIAGMN_23640 0.10 -0.9

Or see this region's nucleotide sequence