Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_23480 and NIAGMN_23485 are separated by 270 nucleotides NIAGMN_23485 and NIAGMN_23490 overlap by 1 nucleotides NIAGMN_23490 and NIAGMN_23495 are separated by 7 nucleotides NIAGMN_23495 and bor are separated by 31 nucleotides bor and NIAGMN_23505 are separated by 149 nucleotides NIAGMN_23505 and NIAGMN_23510 are separated by 55 nucleotides
NIAGMN_23480: NIAGMN_23480 - SAR-endolysin, at 4,592,858 to 4,593,391
_23480
NIAGMN_23485: NIAGMN_23485 - Phage antirepressor protein, at 4,593,662 to 4,594,231
_23485
NIAGMN_23490: NIAGMN_23490 - hypothetical protein, at 4,594,231 to 4,594,377
_23490
NIAGMN_23495: NIAGMN_23495 - Spanin, inner membrane subunit, at 4,594,385 to 4,594,849
_23495
NIAGMN_23500: bor - serum resistance lipoprotein Bor, at 4,594,881 to 4,595,174
bor
NIAGMN_23505: NIAGMN_23505 - hypothetical protein, at 4,595,324 to 4,595,527
_23505
NIAGMN_23510: NIAGMN_23510 - terminase, at 4,595,583 to 4,596,389
_23510
Position (kb) 4594
4595 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4594.919 kb on - strand, within bor at 4594.919 kb on - strand, within bor at 4594.919 kb on - strand, within bor at 4595.109 kb on - strand, within bor at 4595.109 kb on - strand, within bor at 4595.276 kb on + strand at 4595.281 kb on + strand at 4595.281 kb on + strand at 4595.308 kb on + strand at 4595.308 kb on + strand at 4595.309 kb on - strand at 4595.319 kb on + strand at 4595.319 kb on + strand at 4595.323 kb on + strand at 4595.323 kb on + strand at 4595.324 kb on - strand at 4595.742 kb on - strand, within NIAGMN_23510
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,594,919 - bor NIAGMN_23500 0.13 -0.2 4,594,919 - bor NIAGMN_23500 0.13 -0.1 4,594,919 - bor NIAGMN_23500 0.13 -0.2 4,595,109 - bor NIAGMN_23500 0.78 -0.4 4,595,109 - bor NIAGMN_23500 0.78 -0.7 4,595,276 + +0.3 4,595,281 + -1.9 4,595,281 + -0.2 4,595,308 + +0.3 4,595,308 + -3.1 4,595,309 - -0.2 4,595,319 + -0.8 4,595,319 + -2.1 4,595,323 + +3.1 4,595,323 + -2.5 4,595,324 - -0.2 4,595,742 - NIAGMN_23510 0.20 +0.0
Or see this region's nucleotide sequence