Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt torC and torA overlap by 1 nucleotides torA and torD overlap by 4 nucleotides torD and cbpM are separated by 153 nucleotides
NIAGMN_23145: torC - pentaheme c-type cytochrome TorC, at 4,557,742 to 4,558,914
torC
NIAGMN_23150: torA - trimethylamine-N-oxide reductase TorA, at 4,558,914 to 4,561,460
torA
NIAGMN_23155: torD - molecular chaperone TorD, at 4,561,457 to 4,562,056
torD
NIAGMN_23165: cbpM - chaperone modulator CbpM, at 4,562,210 to 4,562,515
cbpM
Position (kb) 4558
4559
4560
4561
4562 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4557.925 kb on - strand, within torC at 4558.338 kb on + strand, within torC at 4558.518 kb on - strand, within torC at 4558.881 kb on + strand at 4559.441 kb on + strand, within torA at 4559.456 kb on + strand, within torA at 4559.460 kb on - strand, within torA at 4559.481 kb on + strand, within torA at 4559.538 kb on + strand, within torA at 4559.745 kb on + strand, within torA at 4559.745 kb on + strand, within torA at 4559.830 kb on - strand, within torA at 4560.037 kb on + strand, within torA at 4560.038 kb on - strand, within torA at 4560.171 kb on - strand, within torA at 4560.442 kb on + strand, within torA at 4560.513 kb on - strand, within torA at 4560.608 kb on + strand, within torA at 4560.900 kb on + strand, within torA at 4561.027 kb on + strand, within torA at 4561.027 kb on + strand, within torA at 4561.058 kb on + strand, within torA at 4561.135 kb on + strand, within torA at 4561.136 kb on - strand, within torA at 4561.191 kb on + strand, within torA at 4561.343 kb on + strand at 4561.343 kb on + strand at 4561.343 kb on + strand at 4561.431 kb on + strand at 4561.431 kb on + strand at 4561.654 kb on - strand, within torD at 4561.654 kb on - strand, within torD at 4561.768 kb on + strand, within torD at 4562.028 kb on + strand at 4562.054 kb on + strand at 4562.222 kb on + strand at 4562.279 kb on - strand, within cbpM
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,557,925 - torC NIAGMN_23145 0.16 -0.2 4,558,338 + torC NIAGMN_23145 0.51 -0.2 4,558,518 - torC NIAGMN_23145 0.66 -1.4 4,558,881 + +2.6 4,559,441 + torA NIAGMN_23150 0.21 +0.7 4,559,456 + torA NIAGMN_23150 0.21 -0.7 4,559,460 - torA NIAGMN_23150 0.21 +0.8 4,559,481 + torA NIAGMN_23150 0.22 +1.3 4,559,538 + torA NIAGMN_23150 0.24 +1.1 4,559,745 + torA NIAGMN_23150 0.33 -1.9 4,559,745 + torA NIAGMN_23150 0.33 +1.4 4,559,830 - torA NIAGMN_23150 0.36 +1.2 4,560,037 + torA NIAGMN_23150 0.44 -0.6 4,560,038 - torA NIAGMN_23150 0.44 +2.4 4,560,171 - torA NIAGMN_23150 0.49 -1.8 4,560,442 + torA NIAGMN_23150 0.60 +0.3 4,560,513 - torA NIAGMN_23150 0.63 +0.2 4,560,608 + torA NIAGMN_23150 0.67 +3.5 4,560,900 + torA NIAGMN_23150 0.78 -1.2 4,561,027 + torA NIAGMN_23150 0.83 -0.2 4,561,027 + torA NIAGMN_23150 0.83 +0.3 4,561,058 + torA NIAGMN_23150 0.84 +0.3 4,561,135 + torA NIAGMN_23150 0.87 -0.7 4,561,136 - torA NIAGMN_23150 0.87 +0.7 4,561,191 + torA NIAGMN_23150 0.89 +0.6 4,561,343 + -3.3 4,561,343 + +0.7 4,561,343 + -0.5 4,561,431 + +0.5 4,561,431 + -0.2 4,561,654 - torD NIAGMN_23155 0.33 +0.4 4,561,654 - torD NIAGMN_23155 0.33 -2.7 4,561,768 + torD NIAGMN_23155 0.52 +2.2 4,562,028 + +0.6 4,562,054 + +0.2 4,562,222 + +0.7 4,562,279 - cbpM NIAGMN_23165 0.23 -2.2
Or see this region's nucleotide sequence