Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_22870 and tnp-IS3 are separated by 81 nucleotides tnp-IS3 and tnp-IS3 overlap by 1 nucleotides tnp-IS3 and NIAGMN_22885 are separated by 319 nucleotides NIAGMN_22885 and NIAGMN_22890 are separated by 4 nucleotides NIAGMN_22890 and NIAGMN_22895 are separated by 50 nucleotides
NIAGMN_22870: NIAGMN_22870 - 9-O-acetyl-N-acetylneuraminic acid deacetylase, at 4,503,694 to 4,505,544
_22870
NIAGMN_22875: tnp-IS3 - IS3 family transposase, at 4,505,626 to 4,506,513
tnp-IS3
NIAGMN_22880: tnp-IS3 - IS3 family transposase, at 4,506,513 to 4,506,839
tnp-IS3
NIAGMN_22885: NIAGMN_22885 - lysis protein, at 4,507,159 to 4,507,365
_22885
NIAGMN_22890: NIAGMN_22890 - DUF1327 domain-containing protein, at 4,507,370 to 4,507,714
_22890
NIAGMN_22895: NIAGMN_22895 - SAR-endolysin, at 4,507,765 to 4,508,298
_22895
Position (kb)
4506
4507 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4506.928 kb on + strand at 4506.928 kb on + strand at 4506.929 kb on - strand at 4506.929 kb on - strand at 4506.929 kb on - strand at 4506.929 kb on - strand at 4506.929 kb on - strand at 4506.932 kb on + strand at 4506.932 kb on + strand at 4506.932 kb on + strand at 4506.932 kb on + strand at 4506.932 kb on + strand at 4506.932 kb on + strand at 4506.932 kb on + strand at 4506.932 kb on + strand at 4506.932 kb on + strand at 4506.933 kb on - strand at 4506.933 kb on - strand at 4506.933 kb on - strand at 4506.933 kb on - strand at 4506.935 kb on - strand at 4506.981 kb on + strand at 4506.981 kb on + strand at 4506.993 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,506,928 + -1.5 4,506,928 + -1.7 4,506,929 - -0.7 4,506,929 - +1.7 4,506,929 - +0.5 4,506,929 - +1.8 4,506,929 - +1.0 4,506,932 + -0.7 4,506,932 + +1.5 4,506,932 + -0.4 4,506,932 + -2.4 4,506,932 + -2.2 4,506,932 + +1.0 4,506,932 + -0.5 4,506,932 + -0.2 4,506,932 + -0.6 4,506,933 - +2.8 4,506,933 - -1.0 4,506,933 - -0.2 4,506,933 - +2.8 4,506,935 - +1.6 4,506,981 + +1.5 4,506,981 + -0.3 4,506,993 + +0.2
Or see this region's nucleotide sequence