Strain Fitness in Escherichia coli ECRC102 around NIAGMN_22615

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_22615 and tnpB are separated by 49 nucleotidestnpB and tnpB overlap by 4 nucleotides NIAGMN_22615: NIAGMN_22615 - IS66-like element ISEc8 family transposase, at 4,462,464 to 4,464,002 _22615 NIAGMN_22620: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 4,464,052 to 4,464,399 tnpB NIAGMN_22625: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 4,464,396 to 4,464,776 tnpB Position (kb) 4462 4463 4464 4465Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4461.576 kb on + strandat 4461.664 kb on + strandat 4461.688 kb on + strandat 4461.728 kb on + strandat 4461.728 kb on + strandat 4461.751 kb on + strandat 4461.776 kb on - strandat 4461.807 kb on - strandat 4462.014 kb on - strandat 4462.045 kb on + strandat 4462.045 kb on + strandat 4462.173 kb on + strandat 4462.175 kb on + strandat 4464.897 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,461,576 + +3.3
4,461,664 + -1.6
4,461,688 + -2.2
4,461,728 + +0.1
4,461,728 + -0.5
4,461,751 + +0.7
4,461,776 - +1.3
4,461,807 - -0.1
4,462,014 - +1.5
4,462,045 + -0.7
4,462,045 + -0.6
4,462,173 + +2.3
4,462,175 + -1.0
4,464,897 + -1.7

Or see this region's nucleotide sequence