Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_22155 and NIAGMN_22165 are separated by 271 nucleotides NIAGMN_22165 and ibsA are separated by 271 nucleotides ibsA and terY are separated by 220 nucleotides terY and pphC are separated by 77 nucleotides pphC and yegI overlap by 4 nucleotides
NIAGMN_22155: NIAGMN_22155 - Type I toxin-antitoxin system Ibs family toxin, at 4,371,203 to 4,371,259
_22155
NIAGMN_22165: NIAGMN_22165 - Type I toxin-antitoxin system Ibs family toxin, at 4,371,531 to 4,371,587
_22165
NIAGMN_22175: ibsA - Small toxic protein IbsA, at 4,371,859 to 4,371,918
ibsA
NIAGMN_22180: terY - Uncharacterized protein YegL, at 4,372,139 to 4,372,798
terY
NIAGMN_22185: pphC - Serine/threonine-protein phosphatase 3, at 4,372,876 to 4,373,556
pphC
NIAGMN_22190: yegI - protein kinase YegI, at 4,373,553 to 4,375,493
yegI
Position (kb) 4372
4373 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4371.187 kb on - strand at 4371.187 kb on - strand at 4371.190 kb on + strand at 4371.214 kb on - strand, within NIAGMN_22155 at 4371.214 kb on - strand, within NIAGMN_22155 at 4371.234 kb on + strand, within NIAGMN_22155 at 4371.235 kb on - strand, within NIAGMN_22155 at 4371.241 kb on + strand, within NIAGMN_22155 at 4371.242 kb on - strand, within NIAGMN_22155 at 4371.242 kb on - strand, within NIAGMN_22155 at 4371.255 kb on - strand at 4371.255 kb on - strand at 4371.255 kb on - strand at 4371.258 kb on - strand at 4371.306 kb on + strand at 4371.408 kb on - strand at 4371.514 kb on + strand at 4371.562 kb on + strand, within NIAGMN_22165 at 4371.562 kb on + strand, within NIAGMN_22165 at 4371.563 kb on - strand, within NIAGMN_22165 at 4371.568 kb on + strand, within NIAGMN_22165 at 4371.569 kb on - strand, within NIAGMN_22165 at 4371.583 kb on - strand at 4371.583 kb on - strand at 4371.586 kb on - strand at 4371.592 kb on - strand at 4371.888 kb on - strand, within ibsA at 4371.888 kb on - strand, within ibsA at 4371.894 kb on - strand, within ibsA at 4371.901 kb on - strand, within ibsA at 4371.916 kb on + strand at 4371.916 kb on + strand at 4371.916 kb on + strand at 4371.917 kb on - strand at 4371.917 kb on - strand at 4372.078 kb on - strand at 4372.458 kb on + strand, within terY at 4372.492 kb on + strand, within terY at 4372.636 kb on + strand, within terY at 4372.686 kb on + strand, within terY at 4372.705 kb on + strand, within terY at 4372.713 kb on + strand, within terY at 4372.813 kb on + strand at 4372.853 kb on + strand at 4372.996 kb on + strand, within pphC at 4372.996 kb on + strand, within pphC at 4373.040 kb on + strand, within pphC at 4373.346 kb on + strand, within pphC at 4373.355 kb on + strand, within pphC at 4373.523 kb on + strand at 4373.566 kb on + strand at 4373.567 kb on - strand at 4373.568 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,371,187 - +0.5 4,371,187 - -0.6 4,371,190 + +0.3 4,371,214 - NIAGMN_22155 0.19 +0.0 4,371,214 - NIAGMN_22155 0.19 +0.7 4,371,234 + NIAGMN_22155 0.54 -1.1 4,371,235 - NIAGMN_22155 0.56 -1.1 4,371,241 + NIAGMN_22155 0.67 +0.3 4,371,242 - NIAGMN_22155 0.68 -1.0 4,371,242 - NIAGMN_22155 0.68 +0.7 4,371,255 - +0.6 4,371,255 - +0.4 4,371,255 - -1.8 4,371,258 - -1.2 4,371,306 + -1.5 4,371,408 - +0.4 4,371,514 + +0.5 4,371,562 + NIAGMN_22165 0.54 +1.8 4,371,562 + NIAGMN_22165 0.54 +0.7 4,371,563 - NIAGMN_22165 0.56 +2.6 4,371,568 + NIAGMN_22165 0.65 +0.6 4,371,569 - NIAGMN_22165 0.67 +0.4 4,371,583 - -1.1 4,371,583 - +0.5 4,371,586 - -0.1 4,371,592 - +2.7 4,371,888 - ibsA NIAGMN_22175 0.48 +3.0 4,371,888 - ibsA NIAGMN_22175 0.48 -0.0 4,371,894 - ibsA NIAGMN_22175 0.58 -0.3 4,371,901 - ibsA NIAGMN_22175 0.70 +1.2 4,371,916 + +3.5 4,371,916 + -1.6 4,371,916 + -0.1 4,371,917 - +0.0 4,371,917 - -0.5 4,372,078 - +0.7 4,372,458 + terY NIAGMN_22180 0.48 +0.9 4,372,492 + terY NIAGMN_22180 0.53 +0.3 4,372,636 + terY NIAGMN_22180 0.75 -0.1 4,372,686 + terY NIAGMN_22180 0.83 -0.5 4,372,705 + terY NIAGMN_22180 0.86 -1.7 4,372,713 + terY NIAGMN_22180 0.87 -0.6 4,372,813 + +1.7 4,372,853 + +0.0 4,372,996 + pphC NIAGMN_22185 0.18 +0.1 4,372,996 + pphC NIAGMN_22185 0.18 -1.7 4,373,040 + pphC NIAGMN_22185 0.24 -0.5 4,373,346 + pphC NIAGMN_22185 0.69 -1.2 4,373,355 + pphC NIAGMN_22185 0.70 -2.9 4,373,523 + -1.6 4,373,566 + -0.4 4,373,567 - +0.5 4,373,568 + +0.1
Or see this region's nucleotide sequence