Strain Fitness in Escherichia coli ECRC102 around NIAGMN_22095

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgatD and glpR are separated by 99 nucleotidesglpR and yegS are separated by 81 nucleotidesyegS and NIAGMN_22100 are separated by 405 nucleotides NIAGMN_22085: gatD - galactitol-1-phosphate 5-dehydrogenase, at 4,353,956 to 4,354,996 gatD NIAGMN_22090: glpR - transcriptional regulator, at 4,355,096 to 4,355,875 glpR NIAGMN_22095: yegS - lipid kinase YegS, at 4,355,957 to 4,356,856 yegS NIAGMN_22100: NIAGMN_22100 - Uncharacterized protein YegR, at 4,357,262 to 4,357,579 _22100 Position (kb) 4355 4356 4357Strain fitness (log2 ratio) -1 0 1 2 3at 4354.960 kb on + strandat 4355.068 kb on + strandat 4355.361 kb on + strand, within glpRat 4355.619 kb on + strand, within glpRat 4355.800 kb on + strandat 4355.803 kb on + strandat 4355.876 kb on + strandat 4356.084 kb on - strand, within yegSat 4356.351 kb on - strand, within yegSat 4356.367 kb on - strand, within yegSat 4356.782 kb on - strandat 4356.884 kb on - strandat 4356.885 kb on + strandat 4356.886 kb on - strandat 4357.048 kb on + strandat 4357.050 kb on + strandat 4357.737 kb on + strandat 4357.798 kb on - strandat 4357.798 kb on - strandat 4357.846 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,354,960 + -1.4
4,355,068 + +3.4
4,355,361 + glpR NIAGMN_22090 0.34 -0.1
4,355,619 + glpR NIAGMN_22090 0.67 +0.6
4,355,800 + +2.9
4,355,803 + -1.2
4,355,876 + -0.7
4,356,084 - yegS NIAGMN_22095 0.14 +0.1
4,356,351 - yegS NIAGMN_22095 0.44 -0.2
4,356,367 - yegS NIAGMN_22095 0.46 -0.0
4,356,782 - +0.3
4,356,884 - +0.4
4,356,885 + -0.9
4,356,886 - +0.4
4,357,048 + -0.7
4,357,050 + -0.2
4,357,737 + +0.3
4,357,798 - -0.0
4,357,798 - +2.3
4,357,846 - -0.4

Or see this region's nucleotide sequence