Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yegW and yegV overlap by 27 nucleotides yegV and NIAGMN_22040 overlap by 4 nucleotides NIAGMN_22040 and yegT overlap by 4 nucleotides
NIAGMN_22030: yegW - Uncharacterized HTH-type transcriptional regulator YegW, at 4,344,059 to 4,344,805
yegW
NIAGMN_22035: yegV - Uncharacterized sugar kinase YegV, at 4,344,779 to 4,345,744
yegV
NIAGMN_22040: NIAGMN_22040 - ADP-ribosylglycohydrolase family protein, at 4,345,741 to 4,346,745
_22040
NIAGMN_22045: yegT - Putative nucleoside transporter YegT, at 4,346,742 to 4,348,019
yegT
Position (kb) 4345
4346
4347 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4344.753 kb on - strand at 4344.780 kb on + strand at 4344.783 kb on - strand at 4344.804 kb on - strand at 4344.876 kb on - strand, within yegV at 4344.876 kb on - strand, within yegV at 4344.879 kb on - strand, within yegV at 4344.920 kb on + strand, within yegV at 4344.921 kb on - strand, within yegV at 4344.921 kb on - strand, within yegV at 4344.959 kb on + strand, within yegV at 4345.151 kb on + strand, within yegV at 4345.152 kb on - strand, within yegV at 4345.152 kb on - strand, within yegV at 4345.262 kb on + strand, within yegV at 4345.306 kb on - strand, within yegV at 4345.332 kb on - strand, within yegV at 4345.384 kb on + strand, within yegV at 4345.385 kb on - strand, within yegV at 4345.385 kb on - strand, within yegV at 4345.464 kb on - strand, within yegV at 4345.645 kb on - strand, within yegV at 4345.728 kb on - strand at 4345.788 kb on - strand at 4346.008 kb on - strand, within NIAGMN_22040 at 4346.286 kb on + strand, within NIAGMN_22040 at 4346.287 kb on - strand, within NIAGMN_22040 at 4346.327 kb on - strand, within NIAGMN_22040 at 4346.435 kb on - strand, within NIAGMN_22040 at 4346.731 kb on - strand at 4347.018 kb on - strand, within yegT at 4347.024 kb on - strand, within yegT at 4347.050 kb on - strand, within yegT at 4347.056 kb on - strand, within yegT at 4347.085 kb on - strand, within yegT at 4347.131 kb on - strand, within yegT at 4347.144 kb on - strand, within yegT at 4347.153 kb on - strand, within yegT at 4347.246 kb on - strand, within yegT at 4347.335 kb on - strand, within yegT at 4347.706 kb on + strand, within yegT at 4347.706 kb on + strand, within yegT at 4347.706 kb on + strand, within yegT at 4347.707 kb on - strand, within yegT at 4347.707 kb on - strand, within yegT at 4347.707 kb on - strand, within yegT at 4347.719 kb on - strand, within yegT
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,344,753 - -1.0 4,344,780 + -0.8 4,344,783 - -3.1 4,344,804 - -1.3 4,344,876 - yegV NIAGMN_22035 0.10 -0.2 4,344,876 - yegV NIAGMN_22035 0.10 +1.1 4,344,879 - yegV NIAGMN_22035 0.10 -0.5 4,344,920 + yegV NIAGMN_22035 0.15 -3.0 4,344,921 - yegV NIAGMN_22035 0.15 -0.2 4,344,921 - yegV NIAGMN_22035 0.15 -2.7 4,344,959 + yegV NIAGMN_22035 0.19 +0.5 4,345,151 + yegV NIAGMN_22035 0.39 +1.1 4,345,152 - yegV NIAGMN_22035 0.39 -0.5 4,345,152 - yegV NIAGMN_22035 0.39 -1.1 4,345,262 + yegV NIAGMN_22035 0.50 -0.3 4,345,306 - yegV NIAGMN_22035 0.55 +0.4 4,345,332 - yegV NIAGMN_22035 0.57 -2.0 4,345,384 + yegV NIAGMN_22035 0.63 +0.1 4,345,385 - yegV NIAGMN_22035 0.63 -2.1 4,345,385 - yegV NIAGMN_22035 0.63 +0.5 4,345,464 - yegV NIAGMN_22035 0.71 -0.0 4,345,645 - yegV NIAGMN_22035 0.90 -3.3 4,345,728 - +0.5 4,345,788 - +3.0 4,346,008 - NIAGMN_22040 0.27 -0.7 4,346,286 + NIAGMN_22040 0.54 -0.2 4,346,287 - NIAGMN_22040 0.54 -1.1 4,346,327 - NIAGMN_22040 0.58 +1.1 4,346,435 - NIAGMN_22040 0.69 +2.4 4,346,731 - +1.2 4,347,018 - yegT NIAGMN_22045 0.22 +0.3 4,347,024 - yegT NIAGMN_22045 0.22 +0.6 4,347,050 - yegT NIAGMN_22045 0.24 -1.0 4,347,056 - yegT NIAGMN_22045 0.25 +0.5 4,347,085 - yegT NIAGMN_22045 0.27 +3.2 4,347,131 - yegT NIAGMN_22045 0.30 -0.9 4,347,144 - yegT NIAGMN_22045 0.31 -1.5 4,347,153 - yegT NIAGMN_22045 0.32 -0.5 4,347,246 - yegT NIAGMN_22045 0.39 -0.4 4,347,335 - yegT NIAGMN_22045 0.46 -0.7 4,347,706 + yegT NIAGMN_22045 0.75 +0.2 4,347,706 + yegT NIAGMN_22045 0.75 -2.5 4,347,706 + yegT NIAGMN_22045 0.75 -1.1 4,347,707 - yegT NIAGMN_22045 0.76 +0.6 4,347,707 - yegT NIAGMN_22045 0.76 +2.0 4,347,707 - yegT NIAGMN_22045 0.76 -1.0 4,347,719 - yegT NIAGMN_22045 0.76 +3.4
Or see this region's nucleotide sequence