Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mglA and mglC are separated by 15 nucleotides mglC and preA are separated by 242 nucleotides
NIAGMN_21300: mglA - galactose/methyl galactoside ABC transporter ATP-binding protein MglA, at 4,226,075 to 4,227,595
mglA
NIAGMN_21305: mglC - galactose/methyl galactoside ABC transporter permease MglC, at 4,227,611 to 4,228,621
mglC
NIAGMN_21315: preA - NAD-dependent dihydropyrimidine dehydrogenase subunit PreA, at 4,228,864 to 4,230,099
preA
Position (kb) 4227
4228
4229 Strain fitness (log2 ratio) -1
0
1
2
3 at 4226.686 kb on + strand, within mglA at 4226.686 kb on + strand, within mglA at 4226.718 kb on + strand, within mglA at 4226.881 kb on + strand, within mglA at 4226.881 kb on + strand, within mglA at 4226.881 kb on + strand, within mglA at 4228.163 kb on + strand, within mglC at 4228.163 kb on + strand, within mglC at 4228.164 kb on - strand, within mglC at 4228.175 kb on + strand, within mglC at 4228.175 kb on + strand, within mglC at 4228.313 kb on + strand, within mglC at 4228.550 kb on + strand at 4228.924 kb on - strand at 4228.981 kb on - strand at 4228.981 kb on - strand at 4228.981 kb on - strand at 4229.047 kb on - strand, within preA at 4229.074 kb on - strand, within preA at 4229.074 kb on - strand, within preA at 4229.103 kb on - strand, within preA at 4229.103 kb on - strand, within preA at 4229.103 kb on - strand, within preA at 4229.103 kb on - strand, within preA at 4229.133 kb on + strand, within preA at 4229.134 kb on - strand, within preA at 4229.153 kb on - strand, within preA at 4229.215 kb on - strand, within preA at 4229.215 kb on - strand, within preA
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,226,686 + mglA NIAGMN_21300 0.40 +2.3 4,226,686 + mglA NIAGMN_21300 0.40 +0.1 4,226,718 + mglA NIAGMN_21300 0.42 +0.2 4,226,881 + mglA NIAGMN_21300 0.53 -0.1 4,226,881 + mglA NIAGMN_21300 0.53 +0.2 4,226,881 + mglA NIAGMN_21300 0.53 -0.6 4,228,163 + mglC NIAGMN_21305 0.55 +2.8 4,228,163 + mglC NIAGMN_21305 0.55 -0.2 4,228,164 - mglC NIAGMN_21305 0.55 -1.2 4,228,175 + mglC NIAGMN_21305 0.56 +1.6 4,228,175 + mglC NIAGMN_21305 0.56 +0.5 4,228,313 + mglC NIAGMN_21305 0.69 +0.6 4,228,550 + -1.3 4,228,924 - -1.1 4,228,981 - +0.6 4,228,981 - +0.4 4,228,981 - -1.3 4,229,047 - preA NIAGMN_21315 0.15 -0.7 4,229,074 - preA NIAGMN_21315 0.17 +1.8 4,229,074 - preA NIAGMN_21315 0.17 +2.5 4,229,103 - preA NIAGMN_21315 0.19 -0.4 4,229,103 - preA NIAGMN_21315 0.19 +1.5 4,229,103 - preA NIAGMN_21315 0.19 -0.3 4,229,103 - preA NIAGMN_21315 0.19 +0.9 4,229,133 + preA NIAGMN_21315 0.22 +2.6 4,229,134 - preA NIAGMN_21315 0.22 +2.9 4,229,153 - preA NIAGMN_21315 0.23 +2.8 4,229,215 - preA NIAGMN_21315 0.28 +2.5 4,229,215 - preA NIAGMN_21315 0.28 +1.8
Or see this region's nucleotide sequence