Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yejO and Pro_trna are separated by 100 nucleotides Pro_trna and yejM are separated by 74 nucleotides
NIAGMN_21090: yejO - autotransporter YejO, at 4,176,449 to 4,179,040
yejO
NIAGMN_21095: Pro_trna - tRNA-Pro(ggg), at 4,179,141 to 4,179,217
_trna
NIAGMN_21100: yejM - LPS biosynthesis-modulating metalloenzyme YejM, at 4,179,292 to 4,181,052
yejM
Position (kb) 4179
4180 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4178.182 kb on - strand, within yejO at 4178.226 kb on + strand, within yejO at 4178.453 kb on + strand, within yejO at 4178.453 kb on + strand, within yejO at 4178.453 kb on + strand, within yejO at 4178.453 kb on + strand, within yejO at 4178.453 kb on + strand, within yejO at 4178.453 kb on + strand, within yejO at 4178.453 kb on + strand, within yejO at 4178.453 kb on + strand, within yejO at 4178.587 kb on + strand, within yejO at 4178.587 kb on + strand, within yejO at 4178.590 kb on + strand, within yejO at 4178.650 kb on + strand, within yejO at 4178.734 kb on + strand, within yejO at 4178.887 kb on + strand at 4179.052 kb on - strand at 4179.100 kb on - strand at 4179.231 kb on - strand at 4179.262 kb on - strand at 4179.326 kb on - strand at 4179.344 kb on - strand at 4179.379 kb on + strand at 4179.380 kb on - strand at 4179.380 kb on - strand at 4179.380 kb on - strand at 4179.439 kb on - strand at 4179.544 kb on + strand, within yejM at 4179.544 kb on + strand, within yejM at 4179.545 kb on - strand, within yejM at 4179.601 kb on - strand, within yejM at 4179.601 kb on - strand, within yejM at 4180.060 kb on - strand, within yejM at 4180.077 kb on + strand, within yejM at 4180.101 kb on + strand, within yejM at 4180.102 kb on - strand, within yejM at 4180.104 kb on - strand, within yejM at 4180.104 kb on - strand, within yejM at 4180.104 kb on - strand, within yejM at 4180.104 kb on - strand, within yejM at 4180.168 kb on - strand, within yejM at 4180.186 kb on - strand, within yejM
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 4,178,182 - yejO NIAGMN_21090 0.67 +1.1 4,178,226 + yejO NIAGMN_21090 0.69 +1.2 4,178,453 + yejO NIAGMN_21090 0.77 +0.0 4,178,453 + yejO NIAGMN_21090 0.77 +0.2 4,178,453 + yejO NIAGMN_21090 0.77 +1.2 4,178,453 + yejO NIAGMN_21090 0.77 -1.0 4,178,453 + yejO NIAGMN_21090 0.77 +1.2 4,178,453 + yejO NIAGMN_21090 0.77 -1.3 4,178,453 + yejO NIAGMN_21090 0.77 +0.9 4,178,453 + yejO NIAGMN_21090 0.77 -1.6 4,178,587 + yejO NIAGMN_21090 0.82 +0.2 4,178,587 + yejO NIAGMN_21090 0.82 +0.7 4,178,590 + yejO NIAGMN_21090 0.83 +1.1 4,178,650 + yejO NIAGMN_21090 0.85 +1.7 4,178,734 + yejO NIAGMN_21090 0.88 +0.3 4,178,887 + +1.4 4,179,052 - +0.7 4,179,100 - -1.3 4,179,231 - +0.2 4,179,262 - -0.8 4,179,326 - -0.6 4,179,344 - -0.3 4,179,379 + -1.1 4,179,380 - +0.3 4,179,380 - -0.3 4,179,380 - -1.5 4,179,439 - -0.6 4,179,544 + yejM NIAGMN_21100 0.14 -0.0 4,179,544 + yejM NIAGMN_21100 0.14 -1.6 4,179,545 - yejM NIAGMN_21100 0.14 -0.7 4,179,601 - yejM NIAGMN_21100 0.18 -0.4 4,179,601 - yejM NIAGMN_21100 0.18 +0.4 4,180,060 - yejM NIAGMN_21100 0.44 -0.8 4,180,077 + yejM NIAGMN_21100 0.45 +1.7 4,180,101 + yejM NIAGMN_21100 0.46 -3.1 4,180,102 - yejM NIAGMN_21100 0.46 -0.8 4,180,104 - yejM NIAGMN_21100 0.46 -0.2 4,180,104 - yejM NIAGMN_21100 0.46 -0.7 4,180,104 - yejM NIAGMN_21100 0.46 +0.2 4,180,104 - yejM NIAGMN_21100 0.46 +0.3 4,180,168 - yejM NIAGMN_21100 0.50 -3.1 4,180,186 - yejM NIAGMN_21100 0.51 -0.6
Or see this region's nucleotide sequence