Strain Fitness in Escherichia coli ECRC102 around NIAGMN_20680

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntelaD and NIAGMN_20685 are separated by 190 nucleotides NIAGMN_20680: elaD - ElaD/SseL family deubiquitinase, at 4,087,222 to 4,088,442 elaD NIAGMN_20685: NIAGMN_20685 - ribonuclease BN, at 4,088,633 to 4,089,550 _20685 Position (kb) 4087 4088 4089Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4086.294 kb on + strandat 4086.319 kb on - strandat 4086.645 kb on + strandat 4086.661 kb on - strandat 4087.093 kb on + strandat 4087.168 kb on + strandat 4087.229 kb on - strandat 4088.499 kb on + strandat 4088.532 kb on + strandat 4088.571 kb on + strandat 4088.571 kb on + strandat 4088.624 kb on + strandat 4088.625 kb on - strandat 4088.747 kb on - strand, within NIAGMN_20685at 4088.753 kb on + strand, within NIAGMN_20685at 4088.800 kb on + strand, within NIAGMN_20685at 4088.801 kb on - strand, within NIAGMN_20685at 4088.806 kb on + strand, within NIAGMN_20685at 4088.927 kb on - strand, within NIAGMN_20685at 4088.927 kb on - strand, within NIAGMN_20685at 4088.958 kb on - strand, within NIAGMN_20685at 4088.958 kb on - strand, within NIAGMN_20685at 4089.088 kb on + strand, within NIAGMN_20685at 4089.109 kb on - strand, within NIAGMN_20685at 4089.210 kb on + strand, within NIAGMN_20685at 4089.262 kb on + strand, within NIAGMN_20685at 4089.263 kb on - strand, within NIAGMN_20685at 4089.276 kb on + strand, within NIAGMN_20685at 4089.276 kb on + strand, within NIAGMN_20685at 4089.276 kb on + strand, within NIAGMN_20685at 4089.276 kb on + strand, within NIAGMN_20685at 4089.307 kb on + strand, within NIAGMN_20685at 4089.307 kb on + strand, within NIAGMN_20685at 4089.307 kb on + strand, within NIAGMN_20685

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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4,086,294 + +2.7
4,086,319 - -0.9
4,086,645 + +1.4
4,086,661 - -0.2
4,087,093 + +0.9
4,087,168 + +1.0
4,087,229 - +0.9
4,088,499 + -0.2
4,088,532 + -0.8
4,088,571 + +1.7
4,088,571 + +0.8
4,088,624 + +1.3
4,088,625 - -3.0
4,088,747 - NIAGMN_20685 0.12 -0.1
4,088,753 + NIAGMN_20685 0.13 +1.0
4,088,800 + NIAGMN_20685 0.18 -1.3
4,088,801 - NIAGMN_20685 0.18 +0.4
4,088,806 + NIAGMN_20685 0.19 -1.2
4,088,927 - NIAGMN_20685 0.32 +0.7
4,088,927 - NIAGMN_20685 0.32 -0.8
4,088,958 - NIAGMN_20685 0.35 -2.1
4,088,958 - NIAGMN_20685 0.35 -1.2
4,089,088 + NIAGMN_20685 0.50 -3.6
4,089,109 - NIAGMN_20685 0.52 +2.7
4,089,210 + NIAGMN_20685 0.63 +2.9
4,089,262 + NIAGMN_20685 0.69 -0.3
4,089,263 - NIAGMN_20685 0.69 +0.7
4,089,276 + NIAGMN_20685 0.70 -0.8
4,089,276 + NIAGMN_20685 0.70 -0.3
4,089,276 + NIAGMN_20685 0.70 +2.5
4,089,276 + NIAGMN_20685 0.70 -2.4
4,089,307 + NIAGMN_20685 0.73 -0.5
4,089,307 + NIAGMN_20685 0.73 -2.7
4,089,307 + NIAGMN_20685 0.73 -0.3

Or see this region's nucleotide sequence