Strain Fitness in Escherichia coli ECRC102 around NIAGMN_20315

Experiment: Sodium-DL-Lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntmlaA and NIAGMN_20315 are separated by 394 nucleotidesNIAGMN_20315 and fadL are separated by 364 nucleotides NIAGMN_20310: mlaA - phospholipid-binding lipoprotein MlaA, at 4,010,066 to 4,010,821 mlaA NIAGMN_20315: NIAGMN_20315 - Uncharacterized protein YfdF, at 4,011,216 to 4,012,247 _20315 NIAGMN_20320: fadL - long-chain fatty acid transporter FadL, at 4,012,612 to 4,013,952 fadL Position (kb) 4011 4012 4013Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4010.249 kb on + strand, within mlaAat 4010.249 kb on + strand, within mlaAat 4010.467 kb on + strand, within mlaAat 4010.470 kb on + strand, within mlaAat 4010.470 kb on + strand, within mlaAat 4010.470 kb on + strand, within mlaAat 4010.470 kb on + strand, within mlaAat 4010.504 kb on + strand, within mlaAat 4010.514 kb on + strand, within mlaAat 4010.522 kb on + strand, within mlaAat 4010.523 kb on - strand, within mlaAat 4010.614 kb on + strand, within mlaAat 4010.693 kb on + strand, within mlaAat 4010.693 kb on + strand, within mlaAat 4010.695 kb on + strand, within mlaAat 4010.714 kb on + strand, within mlaAat 4010.714 kb on + strand, within mlaAat 4010.889 kb on - strandat 4010.925 kb on - strandat 4012.492 kb on + strandat 4012.566 kb on + strandat 4012.581 kb on - strandat 4012.581 kb on - strandat 4012.623 kb on - strandat 4012.636 kb on - strandat 4012.710 kb on + strandat 4012.711 kb on - strandat 4012.711 kb on - strandat 4012.711 kb on - strandat 4012.712 kb on + strandat 4012.713 kb on - strandat 4012.713 kb on - strandat 4012.713 kb on - strandat 4012.743 kb on + strandat 4012.744 kb on - strandat 4012.747 kb on - strand, within fadLat 4012.755 kb on - strand, within fadLat 4012.804 kb on - strand, within fadLat 4012.867 kb on - strand, within fadLat 4012.878 kb on - strand, within fadLat 4012.881 kb on - strand, within fadLat 4012.881 kb on - strand, within fadLat 4012.881 kb on - strand, within fadLat 4012.881 kb on - strand, within fadLat 4012.881 kb on - strand, within fadLat 4012.905 kb on - strand, within fadLat 4012.915 kb on - strand, within fadLat 4013.007 kb on - strand, within fadLat 4013.082 kb on - strand, within fadLat 4013.129 kb on + strand, within fadLat 4013.134 kb on - strand, within fadLat 4013.134 kb on - strand, within fadLat 4013.163 kb on - strand, within fadLat 4013.163 kb on - strand, within fadLat 4013.163 kb on - strand, within fadLat 4013.218 kb on - strand, within fadL

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
remove
4,010,249 + mlaA NIAGMN_20310 0.24 -0.2
4,010,249 + mlaA NIAGMN_20310 0.24 -0.1
4,010,467 + mlaA NIAGMN_20310 0.53 -2.0
4,010,470 + mlaA NIAGMN_20310 0.53 -1.7
4,010,470 + mlaA NIAGMN_20310 0.53 +2.9
4,010,470 + mlaA NIAGMN_20310 0.53 +0.9
4,010,470 + mlaA NIAGMN_20310 0.53 -1.9
4,010,504 + mlaA NIAGMN_20310 0.58 -0.1
4,010,514 + mlaA NIAGMN_20310 0.59 +1.6
4,010,522 + mlaA NIAGMN_20310 0.60 -2.0
4,010,523 - mlaA NIAGMN_20310 0.60 -0.1
4,010,614 + mlaA NIAGMN_20310 0.72 -0.8
4,010,693 + mlaA NIAGMN_20310 0.83 -0.5
4,010,693 + mlaA NIAGMN_20310 0.83 -0.9
4,010,695 + mlaA NIAGMN_20310 0.83 +0.7
4,010,714 + mlaA NIAGMN_20310 0.86 +0.6
4,010,714 + mlaA NIAGMN_20310 0.86 -2.9
4,010,889 - +0.8
4,010,925 - -0.9
4,012,492 + +0.2
4,012,566 + -1.1
4,012,581 - -1.2
4,012,581 - -0.7
4,012,623 - -1.4
4,012,636 - -1.0
4,012,710 + -0.3
4,012,711 - -0.3
4,012,711 - -0.5
4,012,711 - +0.2
4,012,712 + -0.3
4,012,713 - +1.4
4,012,713 - +0.4
4,012,713 - +2.1
4,012,743 + -1.0
4,012,744 - +1.7
4,012,747 - fadL NIAGMN_20320 0.10 +1.3
4,012,755 - fadL NIAGMN_20320 0.11 +0.0
4,012,804 - fadL NIAGMN_20320 0.14 -0.5
4,012,867 - fadL NIAGMN_20320 0.19 +0.2
4,012,878 - fadL NIAGMN_20320 0.20 -0.5
4,012,881 - fadL NIAGMN_20320 0.20 +0.1
4,012,881 - fadL NIAGMN_20320 0.20 +0.7
4,012,881 - fadL NIAGMN_20320 0.20 +1.1
4,012,881 - fadL NIAGMN_20320 0.20 +0.5
4,012,881 - fadL NIAGMN_20320 0.20 +2.2
4,012,905 - fadL NIAGMN_20320 0.22 +1.3
4,012,915 - fadL NIAGMN_20320 0.23 +0.1
4,013,007 - fadL NIAGMN_20320 0.29 -0.4
4,013,082 - fadL NIAGMN_20320 0.35 -0.2
4,013,129 + fadL NIAGMN_20320 0.39 +1.4
4,013,134 - fadL NIAGMN_20320 0.39 +1.1
4,013,134 - fadL NIAGMN_20320 0.39 +0.5
4,013,163 - fadL NIAGMN_20320 0.41 -0.5
4,013,163 - fadL NIAGMN_20320 0.41 +3.6
4,013,163 - fadL NIAGMN_20320 0.41 +1.1
4,013,218 - fadL NIAGMN_20320 0.45 +0.1

Or see this region's nucleotide sequence