Strain Fitness in Escherichia coli ECRC102 around NIAGMN_19785

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmaeB and eutS are separated by 292 nucleotideseutS and eutP are separated by 12 nucleotideseutP and eutQ overlap by 26 nucleotideseutQ and eutT overlap by 4 nucleotides NIAGMN_19775: maeB - NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase, at 3,907,170 to 3,909,449 maeB NIAGMN_19780: eutS - Bacterial microcompartment shell protein EutS, at 3,909,742 to 3,910,077 eutS NIAGMN_19785: eutP - ethanolamine utilization acetate kinase EutP, at 3,910,090 to 3,910,569 eutP NIAGMN_19790: eutQ - ethanolamine utilization acetate kinase EutQ, at 3,910,544 to 3,911,245 eutQ NIAGMN_19795: eutT - ethanolamine utilization cob(I)yrinic acid a,c-diamide adenosyltransferase EutT, at 3,911,242 to 3,911,973 eutT Position (kb) 3910 3911Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3909.284 kb on + strandat 3909.284 kb on + strandat 3909.458 kb on + strandat 3909.556 kb on - strandat 3909.558 kb on - strandat 3909.623 kb on + strandat 3909.627 kb on + strandat 3909.870 kb on + strand, within eutSat 3909.870 kb on + strand, within eutSat 3909.979 kb on + strand, within eutSat 3910.031 kb on + strand, within eutSat 3910.297 kb on + strand, within eutPat 3910.470 kb on - strand, within eutPat 3910.510 kb on + strand, within eutPat 3910.630 kb on + strand, within eutQat 3910.631 kb on - strand, within eutQat 3910.631 kb on - strand, within eutQat 3910.633 kb on + strand, within eutQat 3910.672 kb on + strand, within eutQat 3910.783 kb on - strand, within eutQat 3911.026 kb on + strand, within eutQat 3911.026 kb on + strand, within eutQat 3911.027 kb on - strand, within eutQat 3911.066 kb on + strand, within eutQat 3911.066 kb on + strand, within eutQat 3911.135 kb on - strand, within eutQat 3911.210 kb on + strandat 3911.210 kb on + strandat 3911.241 kb on + strandat 3911.283 kb on + strandat 3911.283 kb on + strandat 3911.382 kb on + strand, within eutT

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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3,909,284 + +1.1
3,909,284 + +0.8
3,909,458 + -0.0
3,909,556 - +0.7
3,909,558 - +0.0
3,909,623 + -0.3
3,909,627 + -0.9
3,909,870 + eutS NIAGMN_19780 0.38 +1.9
3,909,870 + eutS NIAGMN_19780 0.38 -1.9
3,909,979 + eutS NIAGMN_19780 0.71 +0.3
3,910,031 + eutS NIAGMN_19780 0.86 +3.9
3,910,297 + eutP NIAGMN_19785 0.43 -0.4
3,910,470 - eutP NIAGMN_19785 0.79 -2.4
3,910,510 + eutP NIAGMN_19785 0.88 -0.7
3,910,630 + eutQ NIAGMN_19790 0.12 +0.1
3,910,631 - eutQ NIAGMN_19790 0.12 +1.6
3,910,631 - eutQ NIAGMN_19790 0.12 +0.7
3,910,633 + eutQ NIAGMN_19790 0.13 +0.3
3,910,672 + eutQ NIAGMN_19790 0.18 +0.8
3,910,783 - eutQ NIAGMN_19790 0.34 -0.0
3,911,026 + eutQ NIAGMN_19790 0.69 +3.0
3,911,026 + eutQ NIAGMN_19790 0.69 -0.4
3,911,027 - eutQ NIAGMN_19790 0.69 -0.8
3,911,066 + eutQ NIAGMN_19790 0.74 -1.1
3,911,066 + eutQ NIAGMN_19790 0.74 -3.6
3,911,135 - eutQ NIAGMN_19790 0.84 +2.4
3,911,210 + +1.6
3,911,210 + -0.7
3,911,241 + +3.7
3,911,283 + +0.4
3,911,283 + -1.3
3,911,382 + eutT NIAGMN_19795 0.19 -1.0

Or see this region's nucleotide sequence