Strain Fitness in Escherichia coli ECRC102 around NIAGMN_19320

Experiment: Sodium-DL-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sodium-DL-Lactate
3,805,544	+	yphC	NIAGMN_19310	0.70	-1.2
3,805,544	+	yphC	NIAGMN_19310	0.70	-0.1
3,805,544	+	yphC	NIAGMN_19310	0.70	+1.8
3,805,544	+	yphC	NIAGMN_19310	0.70	+0.3
3,805,544	+	yphC	NIAGMN_19310	0.70	+0.3
3,805,544	+	yphC	NIAGMN_19310	0.70	+0.2
3,805,544	+	yphC	NIAGMN_19310	0.70	-0.9
3,805,544	+	yphC	NIAGMN_19310	0.70	+0.3
3,805,545	-	yphC	NIAGMN_19310	0.71	-0.9
3,805,545	-	yphC	NIAGMN_19310	0.71	+0.3
3,805,545	-	yphC	NIAGMN_19310	0.71	-0.1
3,805,546	+	yphC	NIAGMN_19310	0.71	-0.5
3,805,546	+	yphC	NIAGMN_19310	0.71	+0.2
3,805,546	+	yphC	NIAGMN_19310	0.71	+0.7
3,805,546	+	yphC	NIAGMN_19310	0.71	+0.8
3,805,546	+	yphC	NIAGMN_19310	0.71	+0.9
3,805,546	+	yphC	NIAGMN_19310	0.71	+0.7
3,805,547	-	yphC	NIAGMN_19310	0.72	+0.5
3,805,547	-	yphC	NIAGMN_19310	0.72	-0.6
3,805,547	-	yphC	NIAGMN_19310	0.72	-2.6
3,805,547	-	yphC	NIAGMN_19310	0.72	+0.4
3,805,547	-	yphC	NIAGMN_19310	0.72	-0.4
3,805,550	+	yphC	NIAGMN_19310	0.73	+0.4
3,805,550	+	yphC	NIAGMN_19310	0.73	-1.2
3,805,551	-	yphC	NIAGMN_19310	0.74	+0.3
3,805,595	+				+1.3
3,805,596	-				+2.1
3,805,606	+				-1.7
3,805,606	+				+1.7
3,805,606	+				-1.3
3,805,691	+				+0.9
3,805,741	+		NIAGMN_19315	0.12	-0.1
3,805,805	+		NIAGMN_19315	0.20	+0.8
3,805,805	+		NIAGMN_19315	0.20	-1.3
3,805,898	+		NIAGMN_19315	0.31	+0.3
3,805,899	-		NIAGMN_19315	0.31	+0.7
3,806,015	-		NIAGMN_19315	0.45	+0.3
3,806,026	+		NIAGMN_19315	0.46	-0.6
3,806,027	-		NIAGMN_19315	0.46	+0.9
3,806,027	-		NIAGMN_19315	0.46	-0.5
3,806,061	+		NIAGMN_19315	0.50	+0.6
3,806,061	+		NIAGMN_19315	0.50	-1.2
3,806,061	+		NIAGMN_19315	0.50	+0.4
3,806,086	-		NIAGMN_19315	0.54	+0.1
3,806,223	-		NIAGMN_19315	0.70	+1.0
3,806,223	-		NIAGMN_19315	0.70	+1.4
3,806,455	+				+0.9
3,806,491	+				-0.1
3,806,491	+				-1.9
3,806,491	+				+1.1
3,806,492	-				-0.3
3,806,492	-				+0.5
3,806,492	-				+0.3
3,806,493	+				-2.6
3,806,493	+				+0.9
3,806,493	+				+0.2
3,806,493	+				+0.9
3,806,543	+				+0.8
3,806,579	+	yphB	NIAGMN_19320	0.11	+0.3
3,806,579	+	yphB	NIAGMN_19320	0.11	-0.8
3,806,723	-	yphB	NIAGMN_19320	0.28	+0.4
3,806,726	+	yphB	NIAGMN_19320	0.28	+1.1
3,806,726	+	yphB	NIAGMN_19320	0.28	-1.5
3,806,727	-	yphB	NIAGMN_19320	0.28	-1.5
3,806,727	-	yphB	NIAGMN_19320	0.28	-1.8
3,806,778	+	yphB	NIAGMN_19320	0.34	-0.1
3,806,778	+	yphB	NIAGMN_19320	0.34	+2.2
3,806,794	+	yphB	NIAGMN_19320	0.36	-0.2
3,806,794	+	yphB	NIAGMN_19320	0.36	-1.4
3,806,795	-	yphB	NIAGMN_19320	0.36	-1.7
3,806,795	-	yphB	NIAGMN_19320	0.36	+0.7
3,806,815	+	yphB	NIAGMN_19320	0.38	-0.9
3,806,816	-	yphB	NIAGMN_19320	0.38	+0.3
3,806,816	-	yphB	NIAGMN_19320	0.38	-0.6
3,806,816	-	yphB	NIAGMN_19320	0.38	-0.9
3,806,930	-	yphB	NIAGMN_19320	0.51	-0.2
3,807,026	+	yphB	NIAGMN_19320	0.62	-1.1
3,807,045	+	yphB	NIAGMN_19320	0.64	+0.4
3,807,046	-	yphB	NIAGMN_19320	0.65	+1.6
3,807,054	-	yphB	NIAGMN_19320	0.66	-1.0
3,807,149	+	yphB	NIAGMN_19320	0.76	-0.5
3,807,149	+	yphB	NIAGMN_19320	0.76	+1.3
3,807,149	+	yphB	NIAGMN_19320	0.76	-0.6
3,807,215	-	yphB	NIAGMN_19320	0.84	-0.3
3,807,352	+				+0.5
3,807,360	-				+2.5
3,807,495	-	doxX	NIAGMN_19325	0.22	-0.1
3,807,522	-	doxX	NIAGMN_19325	0.28	+2.7
3,807,613	-	doxX	NIAGMN_19325	0.50	-1.0
3,807,636	-	doxX	NIAGMN_19325	0.55	-0.7
3,807,636	-	doxX	NIAGMN_19325	0.55	+1.7
3,807,689	+	doxX	NIAGMN_19325	0.68	+1.3
3,807,689	+	doxX	NIAGMN_19325	0.68	+2.0
3,807,690	-	doxX	NIAGMN_19325	0.68	-3.1
3,807,690	-	doxX	NIAGMN_19325	0.68	-1.4
3,807,690	-	doxX	NIAGMN_19325	0.68	+0.4
3,807,690	-	doxX	NIAGMN_19325	0.68	+1.2
3,807,690	-	doxX	NIAGMN_19325	0.68	-0.2
3,807,690	-	doxX	NIAGMN_19325	0.68	+0.1
3,807,690	-	doxX	NIAGMN_19325	0.68	+0.3
3,807,690	-	doxX	NIAGMN_19325	0.68	-1.0
3,807,690	-	doxX	NIAGMN_19325	0.68	-1.1
3,807,691	+	doxX	NIAGMN_19325	0.68	+0.7
3,807,691	+	doxX	NIAGMN_19325	0.68	+0.1
3,807,692	-	doxX	NIAGMN_19325	0.69	-3.2
3,807,692	-	doxX	NIAGMN_19325	0.69	-1.4
3,807,692	-	doxX	NIAGMN_19325	0.69	+0.7
3,807,692	-	doxX	NIAGMN_19325	0.69	-0.3
3,807,772	-	doxX	NIAGMN_19325	0.87	+0.7
3,807,772	-	doxX	NIAGMN_19325	0.87	+1.5
3,807,772	-	doxX	NIAGMN_19325	0.87	+0.6
3,807,772	-	doxX	NIAGMN_19325	0.87	+1.3
3,807,809	-				+2.7
3,807,814	-				+1.7
3,807,814	-				+1.1
3,807,814	-				+1.4
3,807,814	-				-1.1
3,807,845	-				-0.6
3,807,863	+				-1.1
3,807,863	+				+0.3
3,807,876	-				-0.7
3,807,923	-				-1.3
3,808,145	+	hcaD	NIAGMN_19330	0.19	+1.7
3,808,146	-	hcaD	NIAGMN_19330	0.19	+1.3
3,808,153	+	hcaD	NIAGMN_19330	0.19	+2.4
3,808,153	+	hcaD	NIAGMN_19330	0.19	-0.9
3,808,154	-	hcaD	NIAGMN_19330	0.19	+2.3
3,808,154	-	hcaD	NIAGMN_19330	0.19	-0.2
3,808,154	-	hcaD	NIAGMN_19330	0.19	-1.2
3,808,267	-	hcaD	NIAGMN_19330	0.29	+0.4