Strain Fitness in Escherichia coli ECRC102 around NIAGMN_18725

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_18720 and alpA are separated by 99 nucleotidesalpA and xerD are separated by 322 nucleotides NIAGMN_18720: NIAGMN_18720 - DUF6387 domain-containing protein, at 3,701,776 to 3,702,627 _18720 NIAGMN_18725: alpA - dipicolinate synthase, at 3,702,727 to 3,702,933 alpA NIAGMN_18730: xerD - site-specific integrase, at 3,703,256 to 3,704,461 xerD Position (kb) 3702 3703Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3701.731 kb on + strandat 3701.740 kb on + strandat 3701.741 kb on - strandat 3701.744 kb on + strandat 3701.744 kb on + strandat 3701.745 kb on - strandat 3701.750 kb on - strandat 3701.750 kb on - strandat 3701.750 kb on - strandat 3701.755 kb on + strandat 3701.756 kb on - strandat 3701.828 kb on + strandat 3701.865 kb on - strand, within NIAGMN_18720at 3701.865 kb on - strand, within NIAGMN_18720at 3701.865 kb on - strand, within NIAGMN_18720at 3701.873 kb on - strand, within NIAGMN_18720at 3701.912 kb on - strand, within NIAGMN_18720at 3701.912 kb on - strand, within NIAGMN_18720at 3702.022 kb on - strand, within NIAGMN_18720at 3702.083 kb on + strand, within NIAGMN_18720at 3702.084 kb on - strand, within NIAGMN_18720at 3702.084 kb on - strand, within NIAGMN_18720at 3702.084 kb on - strand, within NIAGMN_18720at 3702.293 kb on + strand, within NIAGMN_18720at 3702.306 kb on - strand, within NIAGMN_18720at 3702.398 kb on + strand, within NIAGMN_18720at 3702.403 kb on - strand, within NIAGMN_18720at 3702.403 kb on - strand, within NIAGMN_18720at 3702.403 kb on - strand, within NIAGMN_18720at 3702.407 kb on + strand, within NIAGMN_18720at 3702.412 kb on - strand, within NIAGMN_18720at 3702.412 kb on - strand, within NIAGMN_18720at 3702.413 kb on + strand, within NIAGMN_18720at 3702.443 kb on - strand, within NIAGMN_18720at 3702.444 kb on + strand, within NIAGMN_18720at 3702.496 kb on - strand, within NIAGMN_18720at 3702.530 kb on + strand, within NIAGMN_18720at 3702.531 kb on - strand, within NIAGMN_18720at 3702.641 kb on + strandat 3702.689 kb on - strandat 3702.689 kb on - strandat 3702.727 kb on - strandat 3703.208 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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3,701,731 + +1.7
3,701,740 + -0.1
3,701,741 - +2.0
3,701,744 + -1.5
3,701,744 + -0.5
3,701,745 - -1.1
3,701,750 - +0.3
3,701,750 - +0.0
3,701,750 - +0.1
3,701,755 + +2.6
3,701,756 - -0.8
3,701,828 + -0.4
3,701,865 - NIAGMN_18720 0.10 -1.1
3,701,865 - NIAGMN_18720 0.10 -0.2
3,701,865 - NIAGMN_18720 0.10 +3.0
3,701,873 - NIAGMN_18720 0.11 -0.0
3,701,912 - NIAGMN_18720 0.16 -0.3
3,701,912 - NIAGMN_18720 0.16 +0.8
3,702,022 - NIAGMN_18720 0.29 +0.5
3,702,083 + NIAGMN_18720 0.36 +0.1
3,702,084 - NIAGMN_18720 0.36 -1.8
3,702,084 - NIAGMN_18720 0.36 +3.1
3,702,084 - NIAGMN_18720 0.36 -1.3
3,702,293 + NIAGMN_18720 0.61 +1.0
3,702,306 - NIAGMN_18720 0.62 -2.5
3,702,398 + NIAGMN_18720 0.73 +0.7
3,702,403 - NIAGMN_18720 0.74 +0.2
3,702,403 - NIAGMN_18720 0.74 -2.2
3,702,403 - NIAGMN_18720 0.74 -0.4
3,702,407 + NIAGMN_18720 0.74 -1.0
3,702,412 - NIAGMN_18720 0.75 -1.1
3,702,412 - NIAGMN_18720 0.75 +0.7
3,702,413 + NIAGMN_18720 0.75 -1.6
3,702,443 - NIAGMN_18720 0.78 +1.2
3,702,444 + NIAGMN_18720 0.78 -1.1
3,702,496 - NIAGMN_18720 0.85 -0.3
3,702,530 + NIAGMN_18720 0.88 +2.0
3,702,531 - NIAGMN_18720 0.89 +1.5
3,702,641 + +2.7
3,702,689 - +3.1
3,702,689 - -1.0
3,702,727 - -0.8
3,703,208 - +1.7

Or see this region's nucleotide sequence