Strain Fitness in Escherichia coli ECRC102 around NIAGMN_17000

Experiment: Sodium-DL-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sodium-DL-Lactate
3,360,821	-	yggM	NIAGMN_16990	0.25	+0.4
3,360,942	+	yggM	NIAGMN_16990	0.37	+0.0
3,360,942	+	yggM	NIAGMN_16990	0.37	+1.0
3,360,942	+	yggM	NIAGMN_16990	0.37	+1.0
3,360,982	-	yggM	NIAGMN_16990	0.41	-0.7
3,360,982	-	yggM	NIAGMN_16990	0.41	-0.9
3,360,984	+	yggM	NIAGMN_16990	0.41	+0.8
3,360,984	+	yggM	NIAGMN_16990	0.41	-0.7
3,360,985	-	yggM	NIAGMN_16990	0.41	-0.5
3,361,018	+	yggM	NIAGMN_16990	0.44	-0.9
3,361,138	+	yggM	NIAGMN_16990	0.56	+0.8
3,361,218	+	yggM	NIAGMN_16990	0.64	+1.1
3,361,218	+	yggM	NIAGMN_16990	0.64	-1.5
3,361,219	-	yggM	NIAGMN_16990	0.64	-1.7
3,361,252	-	yggM	NIAGMN_16990	0.68	+1.1
3,361,255	+	yggM	NIAGMN_16990	0.68	-1.6
3,361,270	+	yggM	NIAGMN_16990	0.69	-3.5
3,361,271	-	yggM	NIAGMN_16990	0.69	+1.7
3,361,296	+	yggM	NIAGMN_16990	0.72	+1.5
3,361,401	+	yggM	NIAGMN_16990	0.82	+1.3
3,361,588	+				-0.6
3,361,588	+				+0.8
3,361,656	-				+0.6
3,361,665	+				+0.1
3,361,674	+				+0.1
3,361,752	+				-1.6
3,361,780	-				+0.0
3,361,823	-				-2.7
3,361,968	-	hemW	NIAGMN_17000	0.13	-2.5
3,361,970	-	hemW	NIAGMN_17000	0.13	+2.8
3,362,021	+	hemW	NIAGMN_17000	0.18	-0.3
3,362,087	+	hemW	NIAGMN_17000	0.23	+1.1
3,362,087	+	hemW	NIAGMN_17000	0.23	-1.1
3,362,179	+	hemW	NIAGMN_17000	0.31	-2.2
3,362,179	+	hemW	NIAGMN_17000	0.31	-0.7
3,362,197	+	hemW	NIAGMN_17000	0.33	+0.2
3,362,237	-	hemW	NIAGMN_17000	0.37	+0.8
3,362,252	-	hemW	NIAGMN_17000	0.38	-0.9
3,362,277	+	hemW	NIAGMN_17000	0.40	+0.7
3,362,278	-	hemW	NIAGMN_17000	0.40	+1.7
3,362,301	-	hemW	NIAGMN_17000	0.42	-0.6
3,362,354	+	hemW	NIAGMN_17000	0.47	+0.5
3,362,355	-	hemW	NIAGMN_17000	0.47	+2.9
3,362,355	-	hemW	NIAGMN_17000	0.47	-1.2
3,362,355	-	hemW	NIAGMN_17000	0.47	-3.1
3,362,357	+	hemW	NIAGMN_17000	0.47	+0.1
3,362,358	-	hemW	NIAGMN_17000	0.47	+1.5
3,362,358	-	hemW	NIAGMN_17000	0.47	+1.2
3,362,408	+	hemW	NIAGMN_17000	0.52	+0.6
3,362,484	-	hemW	NIAGMN_17000	0.58	+2.9
3,362,488	-	hemW	NIAGMN_17000	0.59	-0.7
3,362,543	+	hemW	NIAGMN_17000	0.64	-0.7
3,362,544	-	hemW	NIAGMN_17000	0.64	-0.6
3,362,544	-	hemW	NIAGMN_17000	0.64	-2.3
3,362,544	-	hemW	NIAGMN_17000	0.64	-1.2
3,362,584	-	hemW	NIAGMN_17000	0.67	-0.5
3,362,597	+	hemW	NIAGMN_17000	0.68	+0.1
3,362,598	-	hemW	NIAGMN_17000	0.68	-0.5
3,362,644	-	hemW	NIAGMN_17000	0.72	+0.4
3,362,670	-	hemW	NIAGMN_17000	0.75	+0.1
3,362,670	-	hemW	NIAGMN_17000	0.75	+1.0
3,362,768	+	hemW	NIAGMN_17000	0.83	+0.0
3,362,843	-	hemW	NIAGMN_17000	0.90	-0.6
3,362,893	+				-0.1
3,362,929	+				-0.1
3,362,930	-				-0.9
3,362,951	+				-1.2
3,362,959	-				-1.9
3,362,959	-				-2.5
3,362,959	-				+0.9
3,362,963	-				-1.2
3,363,058	+	rdgB	NIAGMN_17005	0.18	+0.1
3,363,058	+	rdgB	NIAGMN_17005	0.18	+1.9
3,363,111	+	rdgB	NIAGMN_17005	0.27	+2.5
3,363,218	-	rdgB	NIAGMN_17005	0.45	-0.0
3,363,293	+	rdgB	NIAGMN_17005	0.58	-0.5
3,363,294	-	rdgB	NIAGMN_17005	0.58	-0.4
3,363,323	-	rdgB	NIAGMN_17005	0.63	-0.1
3,363,323	-	rdgB	NIAGMN_17005	0.63	-1.8
3,363,543	+				-0.3
3,363,543	+				+0.7
3,363,543	+				-1.4
3,363,544	-				+0.4
3,363,552	+				+0.9
3,363,552	+				-1.4
3,363,553	-				-0.2
3,363,553	-				+0.4
3,363,556	+				-0.0
3,363,556	+				-3.1
3,363,557	-				-1.0
3,363,557	-				+1.4
3,363,557	-				+0.2
3,363,557	-				+0.5
3,363,557	-				+1.1
3,363,561	-				-1.2
3,363,605	-	yggU	NIAGMN_17010	0.19	-0.1
3,363,728	-	yggU	NIAGMN_17010	0.61	+0.1
3,363,756	-	yggU	NIAGMN_17010	0.70	+0.7
3,363,766	+	yggU	NIAGMN_17010	0.74	+0.2
3,363,767	-	yggU	NIAGMN_17010	0.74	+0.2
3,363,796	-	yggU	NIAGMN_17010	0.84	-1.7
3,363,796	-	yggU	NIAGMN_17010	0.84	-3.6
3,363,796	-	yggU	NIAGMN_17010	0.84	+0.1
3,363,830	+				+0.8
3,363,887	-				-0.3
3,363,887	-				-0.8
3,363,918	-	yggT	NIAGMN_17015	0.14	-1.6