Strain Fitness in Escherichia coli ECRC102 around NIAGMN_16290

Experiment: Sodium-DL-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sodium-DL-Lactate
3,217,945	+	uxaC	NIAGMN_16285	0.42	-0.7
3,217,952	+	uxaC	NIAGMN_16285	0.42	+0.8
3,217,952	+	uxaC	NIAGMN_16285	0.42	+1.0
3,217,952	+	uxaC	NIAGMN_16285	0.42	-0.4
3,217,953	-	uxaC	NIAGMN_16285	0.42	+0.7
3,217,953	-	uxaC	NIAGMN_16285	0.42	-0.5
3,217,953	-	uxaC	NIAGMN_16285	0.42	+1.4
3,218,056	+	uxaC	NIAGMN_16285	0.50	+0.3
3,218,057	-	uxaC	NIAGMN_16285	0.50	+0.4
3,218,213	+	uxaC	NIAGMN_16285	0.61	-1.3
3,218,213	+	uxaC	NIAGMN_16285	0.61	+0.6
3,218,260	+	uxaC	NIAGMN_16285	0.64	-1.0
3,218,264	-	uxaC	NIAGMN_16285	0.64	-0.1
3,218,264	-	uxaC	NIAGMN_16285	0.64	-0.5
3,218,264	-	uxaC	NIAGMN_16285	0.64	-0.9
3,218,301	+	uxaC	NIAGMN_16285	0.67	-0.7
3,218,302	-	uxaC	NIAGMN_16285	0.67	-0.3
3,218,347	+	uxaC	NIAGMN_16285	0.70	-2.0
3,218,347	+	uxaC	NIAGMN_16285	0.70	-0.4
3,218,464	+	uxaC	NIAGMN_16285	0.78	-1.0
3,218,464	+	uxaC	NIAGMN_16285	0.78	+0.2
3,218,464	+	uxaC	NIAGMN_16285	0.78	-0.7
3,218,465	-	uxaC	NIAGMN_16285	0.79	-0.3
3,218,465	-	uxaC	NIAGMN_16285	0.79	-1.5
3,218,465	-	uxaC	NIAGMN_16285	0.79	-0.1
3,218,504	-	uxaC	NIAGMN_16285	0.81	-0.7
3,218,596	+	uxaC	NIAGMN_16285	0.88	+0.6
3,218,597	-	uxaC	NIAGMN_16285	0.88	+1.4
3,218,609	+	uxaC	NIAGMN_16285	0.89	-0.3
3,218,609	+	uxaC	NIAGMN_16285	0.89	+0.4
3,218,610	-	uxaC	NIAGMN_16285	0.89	+1.1
3,218,624	+	uxaC	NIAGMN_16285	0.90	+0.1
3,218,624	+	uxaC	NIAGMN_16285	0.90	-0.8
3,218,728	+				+0.2
3,218,744	+				+2.4
3,218,745	-				+0.8
3,218,745	-				-0.8
3,218,765	+				+0.0
3,218,765	+				-1.0
3,218,765	+				-0.1
3,218,765	+				-1.1
3,218,766	-				-2.4
3,218,766	-				-0.6
3,218,781	+				-1.4
3,218,781	+				-0.3
3,218,788	+				-2.2
3,218,788	+				+0.7
3,218,788	+				-0.7
3,218,788	+				+0.0
3,218,788	+				+0.6
3,218,788	+				-0.8
3,218,788	+				-0.7
3,218,788	+				-0.5
3,218,788	+				-0.4
3,218,788	+				-2.5
3,218,789	-				-0.6
3,218,789	-				-1.3
3,218,789	-				-0.8
3,218,907	+				+0.1
3,218,907	+				+0.6
3,218,908	-				+2.2
3,218,953	+	uxaA	NIAGMN_16290	0.11	-0.7
3,218,953	+	uxaA	NIAGMN_16290	0.11	+0.2
3,218,953	+	uxaA	NIAGMN_16290	0.11	-0.1
3,218,953	+	uxaA	NIAGMN_16290	0.11	+1.6
3,218,954	-	uxaA	NIAGMN_16290	0.12	-2.4
3,218,954	-	uxaA	NIAGMN_16290	0.12	+1.0
3,219,018	+	uxaA	NIAGMN_16290	0.16	+0.7
3,219,019	-	uxaA	NIAGMN_16290	0.16	-1.0
3,219,112	+	uxaA	NIAGMN_16290	0.22	+0.5
3,219,112	+	uxaA	NIAGMN_16290	0.22	-1.7
3,219,113	-	uxaA	NIAGMN_16290	0.22	-1.7
3,219,113	-	uxaA	NIAGMN_16290	0.22	+0.4
3,219,272	-	uxaA	NIAGMN_16290	0.33	-0.1
3,219,272	-	uxaA	NIAGMN_16290	0.33	+1.4
3,219,303	+	uxaA	NIAGMN_16290	0.35	-1.5
3,219,304	-	uxaA	NIAGMN_16290	0.35	-1.4
3,219,304	-	uxaA	NIAGMN_16290	0.35	-0.3
3,219,304	-	uxaA	NIAGMN_16290	0.35	+1.6
3,219,304	-	uxaA	NIAGMN_16290	0.35	+0.9
3,219,505	+	uxaA	NIAGMN_16290	0.49	+0.4
3,219,505	+	uxaA	NIAGMN_16290	0.49	+2.7
3,219,505	+	uxaA	NIAGMN_16290	0.49	+2.9
3,219,505	+	uxaA	NIAGMN_16290	0.49	+2.3
3,219,505	+	uxaA	NIAGMN_16290	0.49	-1.4
3,219,505	+	uxaA	NIAGMN_16290	0.49	-0.0
3,219,506	-	uxaA	NIAGMN_16290	0.49	+2.2
3,219,506	-	uxaA	NIAGMN_16290	0.49	-1.1
3,219,506	-	uxaA	NIAGMN_16290	0.49	+0.4
3,219,525	+	uxaA	NIAGMN_16290	0.50	-1.7
3,219,526	-	uxaA	NIAGMN_16290	0.50	+1.2
3,219,598	-	uxaA	NIAGMN_16290	0.55	+1.3
3,219,600	+	uxaA	NIAGMN_16290	0.55	-0.3
3,219,600	+	uxaA	NIAGMN_16290	0.55	+2.0
3,219,600	+	uxaA	NIAGMN_16290	0.55	-1.5
3,219,634	+	uxaA	NIAGMN_16290	0.57	-0.1
3,219,634	+	uxaA	NIAGMN_16290	0.57	-1.4
3,219,635	-	uxaA	NIAGMN_16290	0.57	+0.9
3,219,657	+	uxaA	NIAGMN_16290	0.59	+0.4
3,219,772	+	uxaA	NIAGMN_16290	0.67	+1.5
3,219,772	+	uxaA	NIAGMN_16290	0.67	+1.1
3,219,773	-	uxaA	NIAGMN_16290	0.67	+0.4
3,219,777	+	uxaA	NIAGMN_16290	0.67	-0.1
3,219,778	-	uxaA	NIAGMN_16290	0.67	+0.1
3,219,778	-	uxaA	NIAGMN_16290	0.67	+0.4
3,219,778	-	uxaA	NIAGMN_16290	0.67	+0.3
3,219,852	+	uxaA	NIAGMN_16290	0.72	+0.6
3,219,852	+	uxaA	NIAGMN_16290	0.72	-0.4
3,219,852	+	uxaA	NIAGMN_16290	0.72	-0.4
3,219,853	-	uxaA	NIAGMN_16290	0.72	-1.2
3,219,947	+	uxaA	NIAGMN_16290	0.78	+0.6
3,219,948	-	uxaA	NIAGMN_16290	0.78	-0.0
3,219,972	-	uxaA	NIAGMN_16290	0.80	+1.2
3,220,006	-	uxaA	NIAGMN_16290	0.82	-0.6
3,220,171	-				+0.6
3,220,260	-				+0.6
3,220,265	+				+0.6
3,220,266	-				+0.8
3,220,267	+				+0.7
3,220,268	-				-0.8
3,220,341	-				+0.5
3,220,348	+				+2.2
3,220,348	+				-1.4
3,220,349	-				+0.3
3,220,349	-				-0.3
3,220,361	+				-0.1
3,220,406	-				-1.0
3,220,460	+	ygjV	NIAGMN_16295	0.20	-1.8
3,220,461	-	ygjV	NIAGMN_16295	0.20	-0.6
3,220,461	-	ygjV	NIAGMN_16295	0.20	+0.2
3,220,461	-	ygjV	NIAGMN_16295	0.20	-0.4
3,220,461	-	ygjV	NIAGMN_16295	0.20	+0.6
3,220,462	+	ygjV	NIAGMN_16295	0.20	+1.2
3,220,502	+	ygjV	NIAGMN_16295	0.27	-0.6
3,220,528	+	ygjV	NIAGMN_16295	0.32	-0.2
3,220,528	+	ygjV	NIAGMN_16295	0.32	+0.6
3,220,540	+	ygjV	NIAGMN_16295	0.34	+0.4
3,220,540	+	ygjV	NIAGMN_16295	0.34	-0.3
3,220,550	-	ygjV	NIAGMN_16295	0.36	-0.8
3,220,554	+	ygjV	NIAGMN_16295	0.37	-0.5
3,220,641	+	ygjV	NIAGMN_16295	0.52	+0.9
3,220,641	+	ygjV	NIAGMN_16295	0.52	+0.4
3,220,642	-	ygjV	NIAGMN_16295	0.53	-0.3
3,220,642	-	ygjV	NIAGMN_16295	0.53	-0.8
3,220,669	+	ygjV	NIAGMN_16295	0.57	-1.4
3,220,789	+	ygjV	NIAGMN_16295	0.79	+1.7
3,220,801	+	ygjV	NIAGMN_16295	0.81	-0.0
3,220,862	-				+0.2
3,220,909	+				-0.4
3,220,909	+				+0.1
3,220,909	+				+0.6
3,220,910	-				-0.9
3,220,910	-				+0.7
3,220,910	-				+0.1
3,220,910	-				+0.4
3,220,913	+				+0.4
3,220,914	-				-0.0
3,220,914	-				-1.6
3,221,020	-				-1.5
3,221,031	-				-0.4
3,221,073	-	sstT	NIAGMN_16300	0.13	-1.2
3,221,081	+	sstT	NIAGMN_16300	0.14	-0.0
3,221,081	+	sstT	NIAGMN_16300	0.14	+2.7
3,221,082	-	sstT	NIAGMN_16300	0.14	+0.6
3,221,082	-	sstT	NIAGMN_16300	0.14	-0.8
3,221,082	-	sstT	NIAGMN_16300	0.14	+1.5
3,221,082	-	sstT	NIAGMN_16300	0.14	-1.0
3,221,085	-	sstT	NIAGMN_16300	0.14	+0.3
3,221,158	-	sstT	NIAGMN_16300	0.20	-0.1
3,221,205	-	sstT	NIAGMN_16300	0.24	-0.1
3,221,205	-	sstT	NIAGMN_16300	0.24	-1.1
3,221,205	-	sstT	NIAGMN_16300	0.24	+0.3
3,221,205	-	sstT	NIAGMN_16300	0.24	-0.5