Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroG and ybgS are separated by 315 nucleotides ybgS and zitB are separated by 113 nucleotides zitB and pnuC overlap by 4 nucleotides pnuC and nadA are separated by 37 nucleotides
NIAGMN_04790: aroG - 3-deoxy-7-phosphoheptulonate synthase AroG, at 870,491 to 871,543
aroG
NIAGMN_04795: ybgS - Uncharacterized protein YbgS, at 871,859 to 872,239
ybgS
NIAGMN_04800: zitB - CDF family zinc transporter ZitB, at 872,353 to 873,294
zitB
NIAGMN_04805: pnuC - nicotinamide riboside transporter PnuC, at 873,291 to 874,010
pnuC
NIAGMN_04810: nadA - quinolinate synthase NadA, at 874,048 to 875,091
nadA
Position (kb) 872
873
874 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 871.564 kb on - strand at 871.585 kb on - strand at 871.585 kb on - strand at 871.595 kb on + strand at 871.596 kb on - strand at 871.657 kb on - strand at 871.793 kb on - strand at 871.793 kb on - strand at 871.795 kb on - strand at 871.795 kb on - strand at 871.795 kb on - strand at 871.836 kb on - strand at 871.859 kb on - strand at 871.902 kb on + strand, within ybgS at 871.992 kb on + strand, within ybgS at 872.026 kb on + strand, within ybgS at 872.027 kb on - strand, within ybgS at 872.046 kb on + strand, within ybgS at 872.047 kb on - strand, within ybgS at 872.069 kb on - strand, within ybgS at 872.237 kb on + strand at 872.257 kb on + strand at 872.258 kb on - strand at 872.308 kb on - strand at 872.308 kb on - strand at 872.334 kb on - strand at 872.398 kb on - strand at 872.401 kb on - strand at 872.656 kb on - strand, within zitB at 872.880 kb on + strand, within zitB at 872.881 kb on - strand, within zitB at 872.987 kb on + strand, within zitB at 872.987 kb on + strand, within zitB at 872.987 kb on + strand, within zitB at 873.036 kb on + strand, within zitB at 873.083 kb on + strand, within zitB at 873.083 kb on + strand, within zitB at 873.083 kb on + strand, within zitB at 873.190 kb on + strand, within zitB at 873.223 kb on + strand at 873.223 kb on + strand at 873.380 kb on - strand, within pnuC at 873.428 kb on + strand, within pnuC at 873.441 kb on - strand, within pnuC at 873.473 kb on + strand, within pnuC at 873.474 kb on - strand, within pnuC at 873.504 kb on + strand, within pnuC at 873.504 kb on + strand, within pnuC at 873.504 kb on + strand, within pnuC at 873.550 kb on - strand, within pnuC at 873.793 kb on - strand, within pnuC at 873.808 kb on + strand, within pnuC at 873.972 kb on + strand at 873.973 kb on - strand at 873.973 kb on - strand at 873.974 kb on + strand at 873.975 kb on - strand at 873.975 kb on - strand at 873.975 kb on - strand at 873.975 kb on - strand at 873.975 kb on - strand at 873.979 kb on - strand at 873.979 kb on - strand at 874.043 kb on - strand at 874.058 kb on - strand at 874.081 kb on - strand at 874.156 kb on + strand, within nadA at 874.157 kb on - strand, within nadA
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 871,564 - +0.0 871,585 - -1.1 871,585 - +1.3 871,595 + +0.5 871,596 - +0.3 871,657 - -0.1 871,793 - -0.6 871,793 - -1.1 871,795 - +2.6 871,795 - -0.3 871,795 - -0.5 871,836 - +1.3 871,859 - +0.6 871,902 + ybgS NIAGMN_04795 0.11 +0.9 871,992 + ybgS NIAGMN_04795 0.35 +3.1 872,026 + ybgS NIAGMN_04795 0.44 +0.4 872,027 - ybgS NIAGMN_04795 0.44 -0.2 872,046 + ybgS NIAGMN_04795 0.49 +1.5 872,047 - ybgS NIAGMN_04795 0.49 -1.3 872,069 - ybgS NIAGMN_04795 0.55 +2.0 872,237 + +1.0 872,257 + -1.2 872,258 - -1.9 872,308 - -1.2 872,308 - -1.9 872,334 - +0.2 872,398 - -0.7 872,401 - -2.2 872,656 - zitB NIAGMN_04800 0.32 +0.6 872,880 + zitB NIAGMN_04800 0.56 -0.2 872,881 - zitB NIAGMN_04800 0.56 +0.6 872,987 + zitB NIAGMN_04800 0.67 -0.3 872,987 + zitB NIAGMN_04800 0.67 -0.5 872,987 + zitB NIAGMN_04800 0.67 +0.5 873,036 + zitB NIAGMN_04800 0.73 -2.0 873,083 + zitB NIAGMN_04800 0.77 +1.3 873,083 + zitB NIAGMN_04800 0.77 -1.6 873,083 + zitB NIAGMN_04800 0.77 -0.7 873,190 + zitB NIAGMN_04800 0.89 +1.4 873,223 + +0.8 873,223 + -1.4 873,380 - pnuC NIAGMN_04805 0.12 -0.8 873,428 + pnuC NIAGMN_04805 0.19 -0.5 873,441 - pnuC NIAGMN_04805 0.21 +1.6 873,473 + pnuC NIAGMN_04805 0.25 -2.5 873,474 - pnuC NIAGMN_04805 0.25 -0.6 873,504 + pnuC NIAGMN_04805 0.30 +1.0 873,504 + pnuC NIAGMN_04805 0.30 -2.4 873,504 + pnuC NIAGMN_04805 0.30 +1.9 873,550 - pnuC NIAGMN_04805 0.36 +0.4 873,793 - pnuC NIAGMN_04805 0.70 -2.0 873,808 + pnuC NIAGMN_04805 0.72 +0.9 873,972 + +0.4 873,973 - +0.9 873,973 - -0.4 873,974 + -0.4 873,975 - +3.4 873,975 - +0.3 873,975 - +1.1 873,975 - -2.4 873,975 - -0.2 873,979 - -2.7 873,979 - +0.6 874,043 - -1.4 874,058 - +0.2 874,081 - -0.8 874,156 + nadA NIAGMN_04810 0.10 -0.2 874,157 - nadA NIAGMN_04810 0.10 -1.7
Or see this region's nucleotide sequence