Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pgl and ybhA are separated by 154 nucleotides ybhA and modC are separated by 0 nucleotides
NIAGMN_04725: pgl - 6-phosphogluconolactonase, at 857,586 to 858,581
pgl
NIAGMN_04730: ybhA - bifunctional pyridoxal phosphate/fructose-1,6-bisphosphate phosphatase, at 858,736 to 859,554
ybhA
NIAGMN_04735: modC - molybdenum ABC transporter ATP-binding protein ModC, at 859,555 to 860,613
modC
Position (kb) 858
859
860 Strain fitness (log2 ratio) -2
-1
0
1
2 at 857.739 kb on - strand, within pgl at 857.823 kb on - strand, within pgl at 857.853 kb on + strand, within pgl at 857.854 kb on - strand, within pgl at 857.854 kb on - strand, within pgl at 857.854 kb on - strand, within pgl at 857.854 kb on - strand, within pgl at 857.873 kb on + strand, within pgl at 857.883 kb on - strand, within pgl at 857.994 kb on + strand, within pgl at 857.995 kb on - strand, within pgl at 858.010 kb on + strand, within pgl at 858.016 kb on + strand, within pgl at 858.017 kb on - strand, within pgl at 858.017 kb on - strand, within pgl at 858.037 kb on - strand, within pgl at 858.041 kb on + strand, within pgl at 858.164 kb on + strand, within pgl at 858.259 kb on - strand, within pgl at 858.280 kb on + strand, within pgl at 858.281 kb on - strand, within pgl at 858.281 kb on - strand, within pgl at 858.281 kb on - strand, within pgl at 858.288 kb on + strand, within pgl at 858.324 kb on - strand, within pgl at 858.324 kb on - strand, within pgl at 858.390 kb on - strand, within pgl at 858.430 kb on + strand, within pgl at 858.430 kb on + strand, within pgl at 858.431 kb on - strand, within pgl at 858.437 kb on - strand, within pgl at 858.690 kb on - strand at 858.690 kb on - strand at 858.690 kb on - strand at 858.776 kb on + strand at 858.777 kb on - strand at 858.801 kb on - strand at 858.852 kb on - strand, within ybhA at 858.896 kb on - strand, within ybhA at 858.924 kb on + strand, within ybhA at 859.000 kb on - strand, within ybhA at 859.000 kb on - strand, within ybhA at 859.054 kb on + strand, within ybhA at 859.054 kb on + strand, within ybhA at 859.054 kb on + strand, within ybhA at 859.054 kb on + strand, within ybhA at 859.054 kb on + strand, within ybhA at 859.054 kb on + strand, within ybhA at 859.055 kb on - strand, within ybhA at 859.055 kb on - strand, within ybhA at 859.055 kb on - strand, within ybhA at 859.075 kb on + strand, within ybhA at 859.192 kb on - strand, within ybhA at 859.199 kb on + strand, within ybhA at 859.506 kb on + strand at 859.537 kb on + strand at 859.538 kb on - strand at 859.553 kb on - strand at 859.708 kb on - strand, within modC at 859.708 kb on - strand, within modC at 859.730 kb on - strand, within modC at 859.730 kb on - strand, within modC at 859.830 kb on + strand, within modC at 859.831 kb on - strand, within modC at 859.918 kb on - strand, within modC at 859.956 kb on + strand, within modC at 859.957 kb on - strand, within modC at 860.063 kb on + strand, within modC at 860.063 kb on + strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.106 kb on - strand, within modC at 860.429 kb on - strand, within modC at 860.530 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 857,739 - pgl NIAGMN_04725 0.15 -0.1 857,823 - pgl NIAGMN_04725 0.24 +1.4 857,853 + pgl NIAGMN_04725 0.27 +0.2 857,854 - pgl NIAGMN_04725 0.27 -2.4 857,854 - pgl NIAGMN_04725 0.27 +1.7 857,854 - pgl NIAGMN_04725 0.27 +1.1 857,854 - pgl NIAGMN_04725 0.27 -0.4 857,873 + pgl NIAGMN_04725 0.29 -0.4 857,883 - pgl NIAGMN_04725 0.30 +0.8 857,994 + pgl NIAGMN_04725 0.41 -0.4 857,995 - pgl NIAGMN_04725 0.41 -1.8 858,010 + pgl NIAGMN_04725 0.43 -2.2 858,016 + pgl NIAGMN_04725 0.43 -2.6 858,017 - pgl NIAGMN_04725 0.43 -1.5 858,017 - pgl NIAGMN_04725 0.43 -0.3 858,037 - pgl NIAGMN_04725 0.45 -0.9 858,041 + pgl NIAGMN_04725 0.46 -1.6 858,164 + pgl NIAGMN_04725 0.58 +1.0 858,259 - pgl NIAGMN_04725 0.68 -1.0 858,280 + pgl NIAGMN_04725 0.70 -1.8 858,281 - pgl NIAGMN_04725 0.70 +2.6 858,281 - pgl NIAGMN_04725 0.70 -0.7 858,281 - pgl NIAGMN_04725 0.70 -1.9 858,288 + pgl NIAGMN_04725 0.70 +2.4 858,324 - pgl NIAGMN_04725 0.74 +2.4 858,324 - pgl NIAGMN_04725 0.74 +0.5 858,390 - pgl NIAGMN_04725 0.81 +2.1 858,430 + pgl NIAGMN_04725 0.85 +0.0 858,430 + pgl NIAGMN_04725 0.85 +1.4 858,431 - pgl NIAGMN_04725 0.85 -0.2 858,437 - pgl NIAGMN_04725 0.85 +0.3 858,690 - -1.9 858,690 - +0.8 858,690 - -1.3 858,776 + -1.3 858,777 - +1.7 858,801 - +0.5 858,852 - ybhA NIAGMN_04730 0.14 -1.8 858,896 - ybhA NIAGMN_04730 0.20 -1.0 858,924 + ybhA NIAGMN_04730 0.23 -0.6 859,000 - ybhA NIAGMN_04730 0.32 -0.8 859,000 - ybhA NIAGMN_04730 0.32 -1.4 859,054 + ybhA NIAGMN_04730 0.39 -1.6 859,054 + ybhA NIAGMN_04730 0.39 -1.3 859,054 + ybhA NIAGMN_04730 0.39 +1.1 859,054 + ybhA NIAGMN_04730 0.39 -1.7 859,054 + ybhA NIAGMN_04730 0.39 +1.2 859,054 + ybhA NIAGMN_04730 0.39 -0.5 859,055 - ybhA NIAGMN_04730 0.39 +1.4 859,055 - ybhA NIAGMN_04730 0.39 +0.0 859,055 - ybhA NIAGMN_04730 0.39 +0.8 859,075 + ybhA NIAGMN_04730 0.41 -1.2 859,192 - ybhA NIAGMN_04730 0.56 -1.0 859,199 + ybhA NIAGMN_04730 0.57 -0.4 859,506 + +1.7 859,537 + +1.7 859,538 - -1.0 859,553 - -1.7 859,708 - modC NIAGMN_04735 0.14 +1.0 859,708 - modC NIAGMN_04735 0.14 +0.4 859,730 - modC NIAGMN_04735 0.17 -0.1 859,730 - modC NIAGMN_04735 0.17 +0.7 859,830 + modC NIAGMN_04735 0.26 -0.4 859,831 - modC NIAGMN_04735 0.26 +0.9 859,918 - modC NIAGMN_04735 0.34 +0.6 859,956 + modC NIAGMN_04735 0.38 -0.4 859,957 - modC NIAGMN_04735 0.38 +0.1 860,063 + modC NIAGMN_04735 0.48 -0.6 860,063 + modC NIAGMN_04735 0.48 -0.0 860,064 - modC NIAGMN_04735 0.48 +0.2 860,064 - modC NIAGMN_04735 0.48 +0.3 860,064 - modC NIAGMN_04735 0.48 +0.0 860,064 - modC NIAGMN_04735 0.48 -0.7 860,064 - modC NIAGMN_04735 0.48 -0.6 860,064 - modC NIAGMN_04735 0.48 +0.2 860,064 - modC NIAGMN_04735 0.48 -0.9 860,064 - modC NIAGMN_04735 0.48 -0.3 860,064 - modC NIAGMN_04735 0.48 +0.4 860,064 - modC NIAGMN_04735 0.48 -1.2 860,106 - modC NIAGMN_04735 0.52 -1.7 860,429 - modC NIAGMN_04735 0.83 -1.4 860,530 - -1.4
Or see this region's nucleotide sequence