Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybjQ and NIAGMN_03915 are separated by 210 nucleotides NIAGMN_03915 and NIAGMN_03920 are separated by 274 nucleotides NIAGMN_03920 and ybjP are separated by 623 nucleotides
NIAGMN_03910: ybjQ - UPF0145 protein YbjQ, at 705,012 to 705,335
ybjQ
NIAGMN_03915: NIAGMN_03915 - hypothetical protein, at 705,546 to 705,836
_03915
NIAGMN_03920: NIAGMN_03920 - hypothetical protein, at 706,111 to 707,352
_03920
NIAGMN_03925: ybjP - lipoprotein, at 707,976 to 708,491
ybjP
Position (kb) 706
707
708 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 705.171 kb on - strand, within ybjQ at 705.175 kb on - strand, within ybjQ at 705.175 kb on - strand, within ybjQ at 705.188 kb on - strand, within ybjQ at 705.454 kb on - strand at 705.458 kb on - strand at 705.529 kb on - strand at 705.529 kb on - strand at 705.529 kb on - strand at 705.570 kb on - strand at 705.587 kb on + strand, within NIAGMN_03915 at 706.417 kb on + strand, within NIAGMN_03920 at 706.504 kb on + strand, within NIAGMN_03920 at 706.573 kb on + strand, within NIAGMN_03920 at 707.730 kb on + strand at 707.758 kb on + strand at 707.758 kb on + strand at 707.760 kb on + strand at 707.811 kb on + strand at 707.812 kb on - strand at 707.960 kb on + strand at 707.992 kb on + strand at 707.992 kb on + strand at 707.999 kb on - strand at 708.051 kb on + strand, within ybjP at 708.051 kb on + strand, within ybjP at 708.059 kb on + strand, within ybjP at 708.121 kb on - strand, within ybjP at 708.197 kb on - strand, within ybjP at 708.197 kb on - strand, within ybjP at 708.197 kb on - strand, within ybjP at 708.197 kb on - strand, within ybjP at 708.200 kb on + strand, within ybjP at 708.221 kb on + strand, within ybjP at 708.306 kb on - strand, within ybjP
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 705,171 - ybjQ NIAGMN_03910 0.49 +2.9 705,175 - ybjQ NIAGMN_03910 0.50 +1.0 705,175 - ybjQ NIAGMN_03910 0.50 -1.2 705,188 - ybjQ NIAGMN_03910 0.54 +0.1 705,454 - +0.2 705,458 - +1.0 705,529 - -0.2 705,529 - +2.3 705,529 - -0.2 705,570 - -0.6 705,587 + NIAGMN_03915 0.14 -1.3 706,417 + NIAGMN_03920 0.25 +0.9 706,504 + NIAGMN_03920 0.32 +0.0 706,573 + NIAGMN_03920 0.37 +2.9 707,730 + -0.5 707,758 + -1.8 707,758 + -1.1 707,760 + +1.7 707,811 + +2.1 707,812 - -0.0 707,960 + +0.8 707,992 + -0.0 707,992 + -0.2 707,999 - -0.3 708,051 + ybjP NIAGMN_03925 0.15 +1.7 708,051 + ybjP NIAGMN_03925 0.15 -2.0 708,059 + ybjP NIAGMN_03925 0.16 -0.4 708,121 - ybjP NIAGMN_03925 0.28 +0.4 708,197 - ybjP NIAGMN_03925 0.43 -2.0 708,197 - ybjP NIAGMN_03925 0.43 -1.0 708,197 - ybjP NIAGMN_03925 0.43 -0.7 708,197 - ybjP NIAGMN_03925 0.43 -2.4 708,200 + ybjP NIAGMN_03925 0.43 -0.6 708,221 + ybjP NIAGMN_03925 0.47 -0.2 708,306 - ybjP NIAGMN_03925 0.64 +0.1
Or see this region's nucleotide sequence