Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hcr and poxB are separated by 132 nucleotides poxB and ltaE are separated by 36 nucleotides
NIAGMN_03880: hcr - NADH oxidoreductase, at 697,778 to 698,746
hcr
NIAGMN_03885: poxB - ubiquinone-dependent pyruvate dehydrogenase, at 698,879 to 700,597
poxB
NIAGMN_03890: ltaE - low-specificity L-threonine aldolase, at 700,634 to 701,635
ltaE
Position (kb) 698
699
700
701 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 697.901 kb on + strand, within hcr at 697.921 kb on + strand, within hcr at 697.921 kb on + strand, within hcr at 697.922 kb on - strand, within hcr at 697.979 kb on + strand, within hcr at 697.979 kb on + strand, within hcr at 697.981 kb on + strand, within hcr at 697.981 kb on + strand, within hcr at 697.981 kb on + strand, within hcr at 697.982 kb on - strand, within hcr at 698.043 kb on + strand, within hcr at 698.114 kb on - strand, within hcr at 698.213 kb on + strand, within hcr at 698.355 kb on + strand, within hcr at 698.355 kb on + strand, within hcr at 698.356 kb on - strand, within hcr at 698.356 kb on - strand, within hcr at 698.365 kb on + strand, within hcr at 698.366 kb on - strand, within hcr at 698.393 kb on + strand, within hcr at 698.393 kb on + strand, within hcr at 698.393 kb on + strand, within hcr at 698.393 kb on + strand, within hcr at 698.394 kb on - strand, within hcr at 698.470 kb on - strand, within hcr at 698.529 kb on - strand, within hcr at 698.647 kb on + strand, within hcr at 698.647 kb on + strand, within hcr at 698.647 kb on + strand, within hcr at 698.648 kb on - strand, within hcr at 698.659 kb on + strand at 698.660 kb on - strand at 698.700 kb on + strand at 698.787 kb on - strand at 698.839 kb on + strand at 698.839 kb on + strand at 698.849 kb on - strand at 698.900 kb on + strand at 698.900 kb on + strand at 698.901 kb on - strand at 698.901 kb on - strand at 698.901 kb on - strand at 698.901 kb on - strand at 698.986 kb on + strand at 699.238 kb on - strand, within poxB at 699.251 kb on - strand, within poxB at 699.251 kb on - strand, within poxB at 699.251 kb on - strand, within poxB at 699.397 kb on + strand, within poxB at 699.407 kb on + strand, within poxB at 699.408 kb on - strand, within poxB at 699.408 kb on - strand, within poxB at 699.615 kb on - strand, within poxB at 700.006 kb on + strand, within poxB at 700.077 kb on + strand, within poxB at 700.243 kb on + strand, within poxB at 700.302 kb on - strand, within poxB at 700.473 kb on + strand at 700.523 kb on + strand at 700.525 kb on + strand at 700.525 kb on + strand at 700.590 kb on + strand at 700.619 kb on + strand at 700.620 kb on - strand at 700.622 kb on + strand at 700.654 kb on + strand at 700.758 kb on - strand, within ltaE at 700.859 kb on + strand, within ltaE at 700.859 kb on + strand, within ltaE at 700.859 kb on + strand, within ltaE at 700.860 kb on - strand, within ltaE at 700.860 kb on - strand, within ltaE at 700.861 kb on + strand, within ltaE at 700.862 kb on - strand, within ltaE at 700.862 kb on - strand, within ltaE at 700.862 kb on - strand, within ltaE at 700.862 kb on - strand, within ltaE at 700.883 kb on - strand, within ltaE at 700.886 kb on + strand, within ltaE at 701.076 kb on - strand, within ltaE at 701.162 kb on + strand, within ltaE at 701.270 kb on + strand, within ltaE at 701.270 kb on + strand, within ltaE at 701.271 kb on - strand, within ltaE at 701.271 kb on - strand, within ltaE at 701.351 kb on + strand, within ltaE at 701.351 kb on + strand, within ltaE at 701.351 kb on + strand, within ltaE at 701.365 kb on + strand, within ltaE at 701.458 kb on + strand, within ltaE at 701.458 kb on + strand, within ltaE at 701.458 kb on + strand, within ltaE at 701.458 kb on + strand, within ltaE at 701.458 kb on + strand, within ltaE at 701.459 kb on - strand, within ltaE at 701.461 kb on + strand, within ltaE at 701.461 kb on + strand, within ltaE at 701.462 kb on - strand, within ltaE at 701.529 kb on + strand, within ltaE at 701.536 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 697,901 + hcr NIAGMN_03880 0.13 -1.8 697,921 + hcr NIAGMN_03880 0.15 -0.9 697,921 + hcr NIAGMN_03880 0.15 -0.8 697,922 - hcr NIAGMN_03880 0.15 +1.2 697,979 + hcr NIAGMN_03880 0.21 -1.7 697,979 + hcr NIAGMN_03880 0.21 +3.1 697,981 + hcr NIAGMN_03880 0.21 +0.7 697,981 + hcr NIAGMN_03880 0.21 -0.0 697,981 + hcr NIAGMN_03880 0.21 +2.2 697,982 - hcr NIAGMN_03880 0.21 -1.0 698,043 + hcr NIAGMN_03880 0.27 +1.2 698,114 - hcr NIAGMN_03880 0.35 -0.8 698,213 + hcr NIAGMN_03880 0.45 -1.1 698,355 + hcr NIAGMN_03880 0.60 -0.7 698,355 + hcr NIAGMN_03880 0.60 -0.1 698,356 - hcr NIAGMN_03880 0.60 -2.0 698,356 - hcr NIAGMN_03880 0.60 -1.6 698,365 + hcr NIAGMN_03880 0.61 +1.6 698,366 - hcr NIAGMN_03880 0.61 +1.8 698,393 + hcr NIAGMN_03880 0.63 -0.6 698,393 + hcr NIAGMN_03880 0.63 -2.9 698,393 + hcr NIAGMN_03880 0.63 -1.3 698,393 + hcr NIAGMN_03880 0.63 +0.9 698,394 - hcr NIAGMN_03880 0.64 -0.9 698,470 - hcr NIAGMN_03880 0.71 +2.2 698,529 - hcr NIAGMN_03880 0.78 -1.3 698,647 + hcr NIAGMN_03880 0.90 +0.4 698,647 + hcr NIAGMN_03880 0.90 -0.4 698,647 + hcr NIAGMN_03880 0.90 +0.5 698,648 - hcr NIAGMN_03880 0.90 -0.9 698,659 + -1.8 698,660 - +3.0 698,700 + -0.0 698,787 - -0.8 698,839 + -1.6 698,839 + -0.6 698,849 - -0.1 698,900 + -0.5 698,900 + +0.6 698,901 - -2.1 698,901 - -2.5 698,901 - +0.7 698,901 - +2.8 698,986 + +0.1 699,238 - poxB NIAGMN_03885 0.21 +1.9 699,251 - poxB NIAGMN_03885 0.22 +0.8 699,251 - poxB NIAGMN_03885 0.22 +1.1 699,251 - poxB NIAGMN_03885 0.22 -0.9 699,397 + poxB NIAGMN_03885 0.30 +2.9 699,407 + poxB NIAGMN_03885 0.31 +0.5 699,408 - poxB NIAGMN_03885 0.31 -0.4 699,408 - poxB NIAGMN_03885 0.31 -0.1 699,615 - poxB NIAGMN_03885 0.43 -0.8 700,006 + poxB NIAGMN_03885 0.66 -2.0 700,077 + poxB NIAGMN_03885 0.70 +0.8 700,243 + poxB NIAGMN_03885 0.79 -0.8 700,302 - poxB NIAGMN_03885 0.83 +1.9 700,473 + +2.6 700,523 + -2.3 700,525 + -0.6 700,525 + +0.6 700,590 + +1.1 700,619 + +0.5 700,620 - +0.2 700,622 + -0.0 700,654 + -1.1 700,758 - ltaE NIAGMN_03890 0.12 -0.3 700,859 + ltaE NIAGMN_03890 0.22 +0.8 700,859 + ltaE NIAGMN_03890 0.22 -1.3 700,859 + ltaE NIAGMN_03890 0.22 -0.6 700,860 - ltaE NIAGMN_03890 0.23 -3.0 700,860 - ltaE NIAGMN_03890 0.23 -2.2 700,861 + ltaE NIAGMN_03890 0.23 +0.3 700,862 - ltaE NIAGMN_03890 0.23 +2.8 700,862 - ltaE NIAGMN_03890 0.23 -2.8 700,862 - ltaE NIAGMN_03890 0.23 +2.6 700,862 - ltaE NIAGMN_03890 0.23 +0.2 700,883 - ltaE NIAGMN_03890 0.25 +0.4 700,886 + ltaE NIAGMN_03890 0.25 -0.0 701,076 - ltaE NIAGMN_03890 0.44 -1.0 701,162 + ltaE NIAGMN_03890 0.53 +1.0 701,270 + ltaE NIAGMN_03890 0.63 -0.8 701,270 + ltaE NIAGMN_03890 0.63 +1.0 701,271 - ltaE NIAGMN_03890 0.64 -0.2 701,271 - ltaE NIAGMN_03890 0.64 -1.0 701,351 + ltaE NIAGMN_03890 0.72 +0.4 701,351 + ltaE NIAGMN_03890 0.72 -0.4 701,351 + ltaE NIAGMN_03890 0.72 +0.4 701,365 + ltaE NIAGMN_03890 0.73 +0.8 701,458 + ltaE NIAGMN_03890 0.82 +2.2 701,458 + ltaE NIAGMN_03890 0.82 +0.1 701,458 + ltaE NIAGMN_03890 0.82 +1.2 701,458 + ltaE NIAGMN_03890 0.82 -0.0 701,458 + ltaE NIAGMN_03890 0.82 +0.2 701,459 - ltaE NIAGMN_03890 0.82 +1.2 701,461 + ltaE NIAGMN_03890 0.83 -0.7 701,461 + ltaE NIAGMN_03890 0.83 -0.8 701,462 - ltaE NIAGMN_03890 0.83 -0.6 701,529 + ltaE NIAGMN_03890 0.89 -0.6 701,536 + -1.4
Or see this region's nucleotide sequence