Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_03690 and ureG are separated by 255 nucleotides ureG and ureF are separated by 11 nucleotides ureF and ureE are separated by 0 nucleotides ureE and ureC are separated by 9 nucleotides
NIAGMN_03690: NIAGMN_03690 - Transposase, at 658,556 to 658,897
_03690
NIAGMN_03695: ureG - urease accessory protein UreG, at 659,153 to 659,770
ureG
NIAGMN_03700: ureF - Urease accessory protein UreF, at 659,782 to 660,456
ureF
NIAGMN_03705: ureE - urease accessory protein UreE, at 660,457 to 660,921
ureE
NIAGMN_03710: ureC - urease subunit alpha, at 660,931 to 662,634
ureC
Position (kb) 659
660
661 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 658.822 kb on - strand, within NIAGMN_03690 at 658.856 kb on + strand, within NIAGMN_03690 at 659.299 kb on - strand, within ureG at 659.318 kb on - strand, within ureG at 659.393 kb on + strand, within ureG at 659.393 kb on + strand, within ureG at 659.394 kb on - strand, within ureG at 659.400 kb on + strand, within ureG at 659.401 kb on - strand, within ureG at 659.401 kb on - strand, within ureG at 659.401 kb on - strand, within ureG at 659.401 kb on - strand, within ureG at 659.402 kb on + strand, within ureG at 659.402 kb on + strand, within ureG at 659.403 kb on - strand, within ureG at 659.832 kb on + strand at 660.086 kb on - strand, within ureF at 660.157 kb on - strand, within ureF at 660.204 kb on - strand, within ureF at 660.257 kb on - strand, within ureF at 660.507 kb on - strand, within ureE at 660.619 kb on + strand, within ureE at 660.673 kb on - strand, within ureE at 661.002 kb on + strand at 661.003 kb on - strand at 661.034 kb on - strand at 661.035 kb on + strand at 661.036 kb on - strand at 661.075 kb on + strand at 661.408 kb on - strand, within ureC at 661.408 kb on - strand, within ureC at 661.416 kb on - strand, within ureC at 661.416 kb on - strand, within ureC
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 658,822 - NIAGMN_03690 0.78 -1.3 658,856 + NIAGMN_03690 0.88 -1.1 659,299 - ureG NIAGMN_03695 0.24 -0.6 659,318 - ureG NIAGMN_03695 0.27 +1.4 659,393 + ureG NIAGMN_03695 0.39 +1.4 659,393 + ureG NIAGMN_03695 0.39 -0.9 659,394 - ureG NIAGMN_03695 0.39 +1.6 659,400 + ureG NIAGMN_03695 0.40 -1.2 659,401 - ureG NIAGMN_03695 0.40 +1.1 659,401 - ureG NIAGMN_03695 0.40 -0.6 659,401 - ureG NIAGMN_03695 0.40 +0.9 659,401 - ureG NIAGMN_03695 0.40 -0.6 659,402 + ureG NIAGMN_03695 0.40 -0.2 659,402 + ureG NIAGMN_03695 0.40 +1.0 659,403 - ureG NIAGMN_03695 0.40 -1.0 659,832 + +0.2 660,086 - ureF NIAGMN_03700 0.45 +2.9 660,157 - ureF NIAGMN_03700 0.56 -1.5 660,204 - ureF NIAGMN_03700 0.63 +1.9 660,257 - ureF NIAGMN_03700 0.70 -0.8 660,507 - ureE NIAGMN_03705 0.11 +0.2 660,619 + ureE NIAGMN_03705 0.35 +0.4 660,673 - ureE NIAGMN_03705 0.46 +1.2 661,002 + -2.3 661,003 - -1.0 661,034 - +1.6 661,035 + -1.0 661,036 - +0.3 661,075 + +1.9 661,408 - ureC NIAGMN_03710 0.28 -0.9 661,408 - ureC NIAGMN_03710 0.28 +1.7 661,416 - ureC NIAGMN_03710 0.28 -1.5 661,416 - ureC NIAGMN_03710 0.28 -0.6
Or see this region's nucleotide sequence