Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ssuE and ssuA overlap by 8 nucleotides ssuA and ssuD overlap by 4 nucleotides ssuD and ssuC are separated by 11 nucleotides ssuC and ssuB overlap by 4 nucleotides
NIAGMN_03060: ssuE - NADPH-dependent FMN reductase, at 527,808 to 528,383
ssuE
NIAGMN_03065: ssuA - aliphatic sulfonate ABC transporter substrate-binding protein SsuA, at 528,376 to 529,335
ssuA
NIAGMN_03070: ssuD - FMNH2-dependent alkanesulfonate monooxygenase, at 529,332 to 530,477
ssuD
NIAGMN_03075: ssuC - aliphatic sulfonate ABC transporter permease SsuC, at 530,489 to 531,280
ssuC
NIAGMN_03080: ssuB - aliphatic sulfonates ABC transporter ATP-binding protein, at 531,277 to 532,044
ssuB
Position (kb) 529
530
531 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 528.390 kb on + strand at 528.390 kb on + strand at 528.466 kb on - strand at 528.486 kb on + strand, within ssuA at 528.807 kb on - strand, within ssuA at 528.807 kb on - strand, within ssuA at 528.860 kb on - strand, within ssuA at 528.900 kb on + strand, within ssuA at 528.931 kb on + strand, within ssuA at 529.125 kb on - strand, within ssuA at 529.252 kb on + strand at 529.586 kb on + strand, within ssuD at 529.646 kb on + strand, within ssuD at 529.793 kb on + strand, within ssuD at 530.158 kb on + strand, within ssuD at 530.159 kb on - strand, within ssuD at 530.159 kb on - strand, within ssuD at 530.906 kb on + strand, within ssuC at 530.907 kb on - strand, within ssuC at 530.908 kb on + strand, within ssuC at 530.932 kb on + strand, within ssuC at 530.935 kb on + strand, within ssuC at 530.965 kb on + strand, within ssuC at 531.172 kb on + strand, within ssuC at 531.283 kb on - strand at 531.337 kb on + strand at 531.371 kb on + strand, within ssuB at 531.371 kb on + strand, within ssuB
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 528,390 + -1.9 528,390 + -1.3 528,466 - +0.0 528,486 + ssuA NIAGMN_03065 0.11 +1.3 528,807 - ssuA NIAGMN_03065 0.45 +0.4 528,807 - ssuA NIAGMN_03065 0.45 -0.0 528,860 - ssuA NIAGMN_03065 0.50 -0.8 528,900 + ssuA NIAGMN_03065 0.55 -0.4 528,931 + ssuA NIAGMN_03065 0.58 -2.5 529,125 - ssuA NIAGMN_03065 0.78 -0.2 529,252 + -0.1 529,586 + ssuD NIAGMN_03070 0.22 -0.2 529,646 + ssuD NIAGMN_03070 0.27 -1.7 529,793 + ssuD NIAGMN_03070 0.40 +0.6 530,158 + ssuD NIAGMN_03070 0.72 -0.5 530,159 - ssuD NIAGMN_03070 0.72 -0.2 530,159 - ssuD NIAGMN_03070 0.72 -2.3 530,906 + ssuC NIAGMN_03075 0.53 -0.4 530,907 - ssuC NIAGMN_03075 0.53 -0.8 530,908 + ssuC NIAGMN_03075 0.53 -0.5 530,932 + ssuC NIAGMN_03075 0.56 -1.2 530,935 + ssuC NIAGMN_03075 0.56 +2.6 530,965 + ssuC NIAGMN_03075 0.60 +0.3 531,172 + ssuC NIAGMN_03075 0.86 -2.0 531,283 - +0.0 531,337 + +0.6 531,371 + ssuB NIAGMN_03080 0.12 -3.1 531,371 + ssuB NIAGMN_03080 0.12 -1.5
Or see this region's nucleotide sequence