Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yccA and tusE are separated by 90 nucleotides tusE and yccX overlap by 4 nucleotides yccX and rlmI are separated by 109 nucleotides rlmI and hspQ are separated by 57 nucleotides hspQ and yccU are separated by 44 nucleotides
NIAGMN_02890: yccA - FtsH protease modulator YccA, at 493,903 to 494,562
yccA
NIAGMN_02895: tusE - sulfurtransferase TusE, at 494,653 to 494,982
tusE
NIAGMN_02900: yccX - acylphosphatase, at 494,979 to 495,257
yccX
NIAGMN_02905: rlmI - 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI, at 495,367 to 496,542
rlmI
NIAGMN_02910: hspQ - heat shock protein HspQ, at 496,600 to 496,917
hspQ
NIAGMN_02915: yccU - Uncharacterized protein YccU, at 496,962 to 497,375
yccU
Position (kb) 495
496
497 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 494.475 kb on + strand, within yccA at 494.497 kb on + strand at 494.645 kb on + strand at 495.208 kb on - strand, within yccX at 495.352 kb on - strand at 495.366 kb on - strand at 496.305 kb on + strand, within rlmI at 496.305 kb on + strand, within rlmI at 496.449 kb on + strand at 496.508 kb on + strand at 496.540 kb on + strand at 496.560 kb on + strand at 496.599 kb on + strand at 496.649 kb on + strand, within hspQ at 496.649 kb on + strand, within hspQ at 496.654 kb on + strand, within hspQ at 496.794 kb on + strand, within hspQ at 496.794 kb on + strand, within hspQ at 496.794 kb on + strand, within hspQ at 496.795 kb on - strand, within hspQ at 496.798 kb on + strand, within hspQ at 496.817 kb on + strand, within hspQ at 496.817 kb on + strand, within hspQ at 496.821 kb on + strand, within hspQ at 496.915 kb on + strand at 496.964 kb on - strand at 497.044 kb on - strand, within yccU at 497.269 kb on - strand, within yccU at 497.273 kb on - strand, within yccU at 497.439 kb on - strand at 497.468 kb on - strand at 497.468 kb on - strand at 497.474 kb on - strand at 497.476 kb on - strand at 497.483 kb on + strand at 497.488 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 494,475 + yccA NIAGMN_02890 0.87 -0.1 494,497 + -1.4 494,645 + -1.3 495,208 - yccX NIAGMN_02900 0.82 -1.1 495,352 - -0.7 495,366 - +0.6 496,305 + rlmI NIAGMN_02905 0.80 +0.8 496,305 + rlmI NIAGMN_02905 0.80 +0.4 496,449 + +3.8 496,508 + -1.3 496,540 + +1.4 496,560 + +0.2 496,599 + -1.6 496,649 + hspQ NIAGMN_02910 0.15 -2.9 496,649 + hspQ NIAGMN_02910 0.15 -0.0 496,654 + hspQ NIAGMN_02910 0.17 -1.5 496,794 + hspQ NIAGMN_02910 0.61 +1.1 496,794 + hspQ NIAGMN_02910 0.61 +1.0 496,794 + hspQ NIAGMN_02910 0.61 -0.4 496,795 - hspQ NIAGMN_02910 0.61 -2.2 496,798 + hspQ NIAGMN_02910 0.62 -0.2 496,817 + hspQ NIAGMN_02910 0.68 +2.5 496,817 + hspQ NIAGMN_02910 0.68 -1.5 496,821 + hspQ NIAGMN_02910 0.69 -1.1 496,915 + +1.5 496,964 - -1.0 497,044 - yccU NIAGMN_02915 0.20 +1.3 497,269 - yccU NIAGMN_02915 0.74 +0.6 497,273 - yccU NIAGMN_02915 0.75 +0.4 497,439 - +0.4 497,468 - +2.1 497,468 - -0.2 497,474 - +1.3 497,476 - +0.9 497,483 + +1.0 497,488 - -1.1
Or see this region's nucleotide sequence