Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_02180 and NIAGMN_02185 are separated by 54 nucleotides NIAGMN_02185 and NIAGMN_02190 overlap by 1 nucleotides NIAGMN_02190 and gpD are separated by 157 nucleotides gpD and insI1 overlap by 50 nucleotides
NIAGMN_02180: NIAGMN_02180 - phage tail protein, at 385,017 to 385,382
_02180
NIAGMN_02185: NIAGMN_02185 - phage major tail tube protein, at 385,437 to 385,949
_02185
NIAGMN_02190: NIAGMN_02190 - phage tail protein, at 385,949 to 387,133
_02190
NIAGMN_02195: gpD - phage tail protein, at 387,291 to 387,614
gpD
NIAGMN_02200: insI1 - IS30 family transposase, at 387,565 to 388,596
insI1
Position (kb) 385
386
387
388 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 384.972 kb on + strand at 384.992 kb on - strand at 385.090 kb on - strand, within NIAGMN_02180 at 385.262 kb on - strand, within NIAGMN_02180 at 385.262 kb on - strand, within NIAGMN_02180 at 385.344 kb on + strand, within NIAGMN_02180 at 385.432 kb on - strand at 385.432 kb on - strand at 385.432 kb on - strand at 385.432 kb on - strand at 385.432 kb on - strand at 385.436 kb on - strand at 385.436 kb on - strand at 385.556 kb on - strand, within NIAGMN_02185 at 385.556 kb on - strand, within NIAGMN_02185 at 385.559 kb on - strand, within NIAGMN_02185 at 385.577 kb on - strand, within NIAGMN_02185 at 385.655 kb on - strand, within NIAGMN_02185 at 385.678 kb on + strand, within NIAGMN_02185 at 385.679 kb on - strand, within NIAGMN_02185 at 385.681 kb on + strand, within NIAGMN_02185 at 385.682 kb on - strand, within NIAGMN_02185 at 385.806 kb on - strand, within NIAGMN_02185 at 385.810 kb on - strand, within NIAGMN_02185 at 385.810 kb on - strand, within NIAGMN_02185 at 385.942 kb on - strand at 386.042 kb on - strand at 386.044 kb on - strand at 386.271 kb on + strand, within NIAGMN_02190 at 386.272 kb on - strand, within NIAGMN_02190 at 386.272 kb on - strand, within NIAGMN_02190 at 386.287 kb on - strand, within NIAGMN_02190 at 386.287 kb on - strand, within NIAGMN_02190 at 386.487 kb on + strand, within NIAGMN_02190 at 386.508 kb on + strand, within NIAGMN_02190 at 387.071 kb on - strand at 387.092 kb on - strand at 387.243 kb on - strand at 387.801 kb on + strand, within insI1 at 387.942 kb on + strand, within insI1 at 387.976 kb on - strand, within insI1
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 384,972 + -3.3 384,992 - +0.9 385,090 - NIAGMN_02180 0.20 +0.2 385,262 - NIAGMN_02180 0.67 -0.3 385,262 - NIAGMN_02180 0.67 -2.1 385,344 + NIAGMN_02180 0.89 +2.6 385,432 - +0.7 385,432 - -1.9 385,432 - +3.4 385,432 - +5.2 385,432 - +0.1 385,436 - +0.5 385,436 - +1.4 385,556 - NIAGMN_02185 0.23 -0.3 385,556 - NIAGMN_02185 0.23 -0.9 385,559 - NIAGMN_02185 0.24 +1.5 385,577 - NIAGMN_02185 0.27 +1.1 385,655 - NIAGMN_02185 0.42 -2.8 385,678 + NIAGMN_02185 0.47 -0.4 385,679 - NIAGMN_02185 0.47 -3.0 385,681 + NIAGMN_02185 0.48 -0.3 385,682 - NIAGMN_02185 0.48 +0.9 385,806 - NIAGMN_02185 0.72 +2.7 385,810 - NIAGMN_02185 0.73 -0.3 385,810 - NIAGMN_02185 0.73 -0.2 385,942 - +0.1 386,042 - +2.9 386,044 - +0.1 386,271 + NIAGMN_02190 0.27 -1.6 386,272 - NIAGMN_02190 0.27 -1.0 386,272 - NIAGMN_02190 0.27 -0.9 386,287 - NIAGMN_02190 0.29 +1.9 386,287 - NIAGMN_02190 0.29 +0.4 386,487 + NIAGMN_02190 0.45 -0.6 386,508 + NIAGMN_02190 0.47 -1.5 387,071 - +1.9 387,092 - -2.0 387,243 - +0.3 387,801 + insI1 NIAGMN_02200 0.23 -1.9 387,942 + insI1 NIAGMN_02200 0.37 +1.5 387,976 - insI1 NIAGMN_02200 0.40 -1.9
Or see this region's nucleotide sequence