Strain Fitness in Escherichia coli ECRC102 around NIAGMN_02005

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntftnB and yecJ are separated by 79 nucleotidesyecJ and azuC are separated by 114 nucleotidesazuC and yecR are separated by 261 nucleotidesyecR and ftnA are separated by 170 nucleotides NIAGMN_02000: ftnB - non-heme ferritin-like protein, at 363,659 to 364,162 ftnB NIAGMN_02005: yecJ - Uncharacterized protein YecJ, at 364,242 to 364,493 yecJ NIAGMN_02010: azuC - stress response protein AzuC, at 364,608 to 364,694 azuC NIAGMN_02015: yecR - Uncharacterized protein YecR, at 364,956 to 365,279 yecR NIAGMN_02020: ftnA - non-heme ferritin, at 365,450 to 365,947 ftnA Position (kb) 364 365Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 363.603 kb on + strandat 363.805 kb on + strand, within ftnBat 364.102 kb on + strand, within ftnBat 364.620 kb on - strand, within azuCat 364.620 kb on - strand, within azuCat 364.659 kb on - strand, within azuCat 364.659 kb on - strand, within azuCat 364.659 kb on - strand, within azuCat 364.668 kb on - strand, within azuCat 364.719 kb on - strandat 364.743 kb on - strandat 364.745 kb on - strandat 364.939 kb on - strandat 365.057 kb on - strand, within yecRat 365.106 kb on + strand, within yecRat 365.213 kb on - strand, within yecRat 365.447 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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363,603 + -1.0
363,805 + ftnB NIAGMN_02000 0.29 -2.6
364,102 + ftnB NIAGMN_02000 0.88 +2.8
364,620 - azuC NIAGMN_02010 0.14 -2.3
364,620 - azuC NIAGMN_02010 0.14 +2.4
364,659 - azuC NIAGMN_02010 0.59 +1.2
364,659 - azuC NIAGMN_02010 0.59 +1.0
364,659 - azuC NIAGMN_02010 0.59 +0.7
364,668 - azuC NIAGMN_02010 0.69 +0.9
364,719 - -0.3
364,743 - -3.2
364,745 - -1.5
364,939 - +1.3
365,057 - yecR NIAGMN_02015 0.31 -0.6
365,106 + yecR NIAGMN_02015 0.46 +0.6
365,213 - yecR NIAGMN_02015 0.79 +0.3
365,447 - +0.4

Or see this region's nucleotide sequence