Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01840

Experiment: Sodium-DL-Lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyecN and cmoA are separated by 40 nucleotidescmoA and cmoB overlap by 4 nucleotidescmoB and torZ are separated by 164 nucleotides NIAGMN_01830: yecN - Inner membrane protein YecN, at 329,778 to 330,173 yecN NIAGMN_01835: cmoA - carboxy-S-adenosyl-L-methionine synthase CmoA, at 330,214 to 330,957 cmoA NIAGMN_01840: cmoB - tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB, at 330,954 to 331,925 cmoB NIAGMN_01850: torZ - trimethylamine N-oxide reductase TorZ, at 332,090 to 334,519 torZ Position (kb) 330 331 332Strain fitness (log2 ratio) -2 -1 0 1 2 3at 330.141 kb on - strandat 330.141 kb on - strandat 330.141 kb on - strandat 330.339 kb on + strand, within cmoAat 330.565 kb on - strand, within cmoAat 331.136 kb on + strand, within cmoBat 331.448 kb on + strand, within cmoBat 331.694 kb on + strand, within cmoBat 331.934 kb on + strandat 331.934 kb on + strandat 332.021 kb on - strandat 332.158 kb on - strandat 332.581 kb on + strand, within torZat 332.842 kb on - strand, within torZat 332.842 kb on - strand, within torZ

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
remove
330,141 - +2.9
330,141 - -1.8
330,141 - +0.3
330,339 + cmoA NIAGMN_01835 0.17 +3.0
330,565 - cmoA NIAGMN_01835 0.47 +0.7
331,136 + cmoB NIAGMN_01840 0.19 -2.2
331,448 + cmoB NIAGMN_01840 0.51 +0.8
331,694 + cmoB NIAGMN_01840 0.76 +0.1
331,934 + +3.3
331,934 + -1.6
332,021 - -1.9
332,158 - +1.0
332,581 + torZ NIAGMN_01850 0.20 +0.1
332,842 - torZ NIAGMN_01850 0.31 +2.5
332,842 - torZ NIAGMN_01850 0.31 -1.3

Or see this region's nucleotide sequence