Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01535

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmanX and manY are separated by 62 nucleotidesmanY and manZ are separated by 12 nucleotidesmanZ and NIAGMN_01545 are separated by 54 nucleotides NIAGMN_01530: manX - PTS mannose transporter subunit IIAB, at 279,459 to 280,430 manX NIAGMN_01535: manY - PTS mannose transporter subunit IIC, at 280,493 to 281,293 manY NIAGMN_01540: manZ - PTS mannose transporter subunit IID, at 281,306 to 282,157 manZ NIAGMN_01545: NIAGMN_01545 - UPF0266 membrane protein YobD, at 282,212 to 282,670 _01545 Position (kb) 280 281 282Strain fitness (log2 ratio) -2 -1 0 1 2 3at 279.532 kb on + strandat 279.659 kb on + strand, within manXat 279.659 kb on + strand, within manXat 279.659 kb on + strand, within manXat 279.659 kb on + strand, within manXat 279.659 kb on + strand, within manXat 279.940 kb on - strand, within manXat 280.031 kb on + strand, within manXat 280.070 kb on + strand, within manXat 280.118 kb on - strand, within manXat 280.186 kb on + strand, within manXat 280.466 kb on + strandat 281.357 kb on - strandat 281.380 kb on + strandat 281.465 kb on + strand, within manZat 281.614 kb on + strand, within manZat 281.740 kb on - strand, within manZat 281.807 kb on + strand, within manZat 281.884 kb on + strand, within manZat 281.993 kb on - strand, within manZat 282.018 kb on + strand, within manZat 282.034 kb on - strand, within manZat 282.058 kb on + strand, within manZat 282.166 kb on + strandat 282.166 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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279,532 + -1.0
279,659 + manX NIAGMN_01530 0.21 -0.9
279,659 + manX NIAGMN_01530 0.21 -0.9
279,659 + manX NIAGMN_01530 0.21 -0.1
279,659 + manX NIAGMN_01530 0.21 +2.3
279,659 + manX NIAGMN_01530 0.21 -0.6
279,940 - manX NIAGMN_01530 0.49 +1.2
280,031 + manX NIAGMN_01530 0.59 +3.7
280,070 + manX NIAGMN_01530 0.63 -0.1
280,118 - manX NIAGMN_01530 0.68 +1.8
280,186 + manX NIAGMN_01530 0.75 -0.1
280,466 + -1.2
281,357 - -1.3
281,380 + -0.8
281,465 + manZ NIAGMN_01540 0.19 +0.3
281,614 + manZ NIAGMN_01540 0.36 -0.5
281,740 - manZ NIAGMN_01540 0.51 +0.1
281,807 + manZ NIAGMN_01540 0.59 -0.1
281,884 + manZ NIAGMN_01540 0.68 +2.4
281,993 - manZ NIAGMN_01540 0.81 -0.7
282,018 + manZ NIAGMN_01540 0.84 -2.0
282,034 - manZ NIAGMN_01540 0.85 -0.3
282,058 + manZ NIAGMN_01540 0.88 +0.2
282,166 + +0.7
282,166 + -0.7

Or see this region's nucleotide sequence