Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01295

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydjF and ydjG are separated by 136 nucleotidesydjG and rbsK are separated by 9 nucleotidesrbsK and ydjI are separated by 4 nucleotides NIAGMN_01290: ydjF - Uncharacterized HTH-type transcriptional regulator YdjF, at 231,295 to 232,053 ydjF NIAGMN_01295: ydjG - NADH-dependent methylglyoxal reductase, at 232,190 to 233,170 ydjG NIAGMN_01300: rbsK - sugar kinase, at 233,180 to 234,112 rbsK NIAGMN_01305: ydjI - Uncharacterized protein YdjI, at 234,117 to 234,953 ydjI Position (kb) 232 233 234Strain fitness (log2 ratio) -2 -1 0 1 2at 231.364 kb on + strandat 231.740 kb on - strand, within ydjFat 231.791 kb on - strand, within ydjFat 232.024 kb on - strandat 232.076 kb on - strandat 232.317 kb on - strand, within ydjGat 232.406 kb on - strand, within ydjGat 232.774 kb on - strand, within ydjGat 232.993 kb on + strand, within ydjGat 232.994 kb on - strand, within ydjGat 233.252 kb on + strandat 233.253 kb on - strandat 233.316 kb on - strand, within rbsKat 233.316 kb on - strand, within rbsKat 233.567 kb on - strand, within rbsKat 233.834 kb on + strand, within rbsK

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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231,364 + -0.5
231,740 - ydjF NIAGMN_01290 0.59 +2.0
231,791 - ydjF NIAGMN_01290 0.65 -0.6
232,024 - -0.7
232,076 - -0.5
232,317 - ydjG NIAGMN_01295 0.13 +0.5
232,406 - ydjG NIAGMN_01295 0.22 -1.6
232,774 - ydjG NIAGMN_01295 0.60 -0.3
232,993 + ydjG NIAGMN_01295 0.82 +0.3
232,994 - ydjG NIAGMN_01295 0.82 -0.8
233,252 + -1.0
233,253 - +0.0
233,316 - rbsK NIAGMN_01300 0.15 +1.7
233,316 - rbsK NIAGMN_01300 0.15 -2.5
233,567 - rbsK NIAGMN_01300 0.41 +1.1
233,834 + rbsK NIAGMN_01300 0.70 -1.5

Or see this region's nucleotide sequence