Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00955

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydiV and nlpC are separated by 246 nucleotidesnlpC and btuD are separated by 77 nucleotidesbtuD and btuE overlap by 1 nucleotidesbtuE and btuC are separated by 62 nucleotides NIAGMN_00945: ydiV - anti-FlhDC factor, at 166,592 to 167,305 ydiV NIAGMN_00950: nlpC - putative endopeptidase NlpC, at 167,552 to 168,016 nlpC NIAGMN_00955: btuD - vitamin B12 ABC transporter ATP-binding protein BtuD, at 168,094 to 168,843 btuD NIAGMN_00960: btuE - bifunctional thioredoxin/glutathione peroxidase, at 168,843 to 169,394 btuE NIAGMN_00965: btuC - vitamin B12 ABC transporter permease BtuC, at 169,457 to 170,437 btuC Position (kb) 168 169Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 167.363 kb on + strandat 167.371 kb on - strandat 167.661 kb on + strand, within nlpCat 167.665 kb on + strand, within nlpCat 167.666 kb on - strand, within nlpCat 168.086 kb on + strandat 168.527 kb on - strand, within btuDat 168.730 kb on - strand, within btuDat 169.526 kb on - strandat 169.651 kb on + strand, within btuCat 169.673 kb on - strand, within btuCat 169.761 kb on - strand, within btuC

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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167,363 + +0.9
167,371 - -0.8
167,661 + nlpC NIAGMN_00950 0.23 +0.4
167,665 + nlpC NIAGMN_00950 0.24 -2.9
167,666 - nlpC NIAGMN_00950 0.25 +0.3
168,086 + -2.0
168,527 - btuD NIAGMN_00955 0.58 +0.2
168,730 - btuD NIAGMN_00955 0.85 +2.3
169,526 - -0.3
169,651 + btuC NIAGMN_00965 0.20 -1.8
169,673 - btuC NIAGMN_00965 0.22 +1.6
169,761 - btuC NIAGMN_00965 0.31 +2.2

Or see this region's nucleotide sequence