Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00885

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydiO and ydiP are separated by 42 nucleotidesydiP and NIAGMN_00890 are separated by 102 nucleotidesNIAGMN_00890 and ydiQ are separated by 36 nucleotides NIAGMN_00880: ydiO - acyl-CoA dehydrogenase, at 152,481 to 153,632 ydiO NIAGMN_00885: ydiP - Uncharacterized HTH-type transcriptional regulator YdiP, at 153,675 to 154,586 ydiP NIAGMN_00890: NIAGMN_00890 - hypothetical protein, at 154,689 to 154,865 _00890 NIAGMN_00895: ydiQ - electron transfer flavoprotein, at 154,902 to 155,666 ydiQ Position (kb) 153 154 155Strain fitness (log2 ratio) -2 -1 0 1 2at 152.877 kb on - strand, within ydiOat 152.970 kb on + strand, within ydiOat 152.972 kb on + strand, within ydiOat 153.066 kb on - strand, within ydiOat 153.092 kb on + strand, within ydiOat 153.588 kb on + strandat 153.908 kb on + strand, within ydiPat 154.368 kb on + strand, within ydiPat 154.380 kb on - strand, within ydiPat 154.402 kb on - strand, within ydiPat 154.658 kb on + strandat 154.733 kb on - strand, within NIAGMN_00890at 155.146 kb on - strand, within ydiQ

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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152,877 - ydiO NIAGMN_00880 0.34 +0.6
152,970 + ydiO NIAGMN_00880 0.42 +2.5
152,972 + ydiO NIAGMN_00880 0.43 +0.1
153,066 - ydiO NIAGMN_00880 0.51 -0.4
153,092 + ydiO NIAGMN_00880 0.53 -0.8
153,588 + +1.0
153,908 + ydiP NIAGMN_00885 0.26 -0.7
154,368 + ydiP NIAGMN_00885 0.76 -0.8
154,380 - ydiP NIAGMN_00885 0.77 +0.7
154,402 - ydiP NIAGMN_00885 0.80 +0.1
154,658 + -1.8
154,733 - NIAGMN_00890 0.25 -1.6
155,146 - ydiQ NIAGMN_00895 0.32 +1.9

Or see this region's nucleotide sequence