Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00850

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydiK and ydiL are separated by 428 nucleotidesydiL and ydiM are separated by 99 nucleotides NIAGMN_00840: ydiK - AI-2E family transporter YdiK, at 144,357 to 145,469 ydiK NIAGMN_00850: ydiL - Uncharacterized protein YdiL, at 145,898 to 146,254 ydiL NIAGMN_00855: ydiM - Inner membrane transport protein YdiM, at 146,354 to 147,568 ydiM Position (kb) 145 146 147Strain fitness (log2 ratio) -3 -2 -1 0 1at 146.347 kb on - strandat 146.470 kb on + strandat 146.597 kb on + strand, within ydiMat 146.897 kb on - strand, within ydiMat 147.080 kb on + strand, within ydiMat 147.099 kb on + strand, within ydiMat 147.111 kb on - strand, within ydiMat 147.224 kb on - strand, within ydiM

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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146,347 - -0.1
146,470 + -2.0
146,597 + ydiM NIAGMN_00855 0.20 -0.1
146,897 - ydiM NIAGMN_00855 0.45 -0.4
147,080 + ydiM NIAGMN_00855 0.60 -2.2
147,099 + ydiM NIAGMN_00855 0.61 +0.5
147,111 - ydiM NIAGMN_00855 0.62 -2.0
147,224 - ydiM NIAGMN_00855 0.72 -3.7

Or see this region's nucleotide sequence