Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydhL and nemR are separated by 102 nucleotides nemR and nemA are separated by 36 nucleotides nemA and NIAGMN_00635 are separated by 80 nucleotides NIAGMN_00635 and rnt are separated by 102 nucleotides
NIAGMN_00620: ydhL - Uncharacterized protein YdhL, at 100,978 to 101,217
ydhL
NIAGMN_00625: nemR - DNA-binding transcriptional regulator NemR, at 101,320 to 101,919
nemR
NIAGMN_00630: nemA - N-ethylmaleimide reductase, at 101,956 to 103,053
nemA
NIAGMN_00635: NIAGMN_00635 - Lactoylglutathione lyase, at 103,134 to 103,541
_00635
NIAGMN_00640: rnt - ribonuclease T, at 103,644 to 104,291
rnt
Position (kb) 101
102
103
104 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 101.260 kb on + strand at 101.261 kb on - strand at 101.272 kb on + strand at 101.343 kb on + strand at 101.344 kb on - strand at 101.420 kb on + strand, within nemR at 101.423 kb on + strand, within nemR at 101.455 kb on + strand, within nemR at 101.461 kb on + strand, within nemR at 101.509 kb on + strand, within nemR at 101.518 kb on + strand, within nemR at 101.518 kb on + strand, within nemR at 101.518 kb on + strand, within nemR at 101.519 kb on - strand, within nemR at 101.559 kb on + strand, within nemR at 101.576 kb on + strand, within nemR at 101.584 kb on + strand, within nemR at 101.587 kb on + strand, within nemR at 101.587 kb on + strand, within nemR at 101.645 kb on + strand, within nemR at 101.682 kb on + strand, within nemR at 101.888 kb on + strand at 101.888 kb on + strand at 101.956 kb on - strand at 102.515 kb on - strand, within nemA at 102.672 kb on + strand, within nemA at 102.721 kb on + strand, within nemA at 102.765 kb on + strand, within nemA at 102.765 kb on + strand, within nemA at 102.766 kb on - strand, within nemA at 102.799 kb on + strand, within nemA at 102.865 kb on + strand, within nemA at 102.984 kb on + strand at 103.009 kb on + strand at 103.030 kb on + strand at 103.149 kb on - strand at 103.224 kb on - strand, within NIAGMN_00635 at 103.308 kb on + strand, within NIAGMN_00635 at 103.308 kb on + strand, within NIAGMN_00635 at 103.347 kb on + strand, within NIAGMN_00635 at 103.364 kb on + strand, within NIAGMN_00635 at 103.373 kb on + strand, within NIAGMN_00635
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 101,260 + +0.9 101,261 - +1.3 101,272 + +0.2 101,343 + +0.0 101,344 - -0.2 101,420 + nemR NIAGMN_00625 0.17 -0.9 101,423 + nemR NIAGMN_00625 0.17 +0.5 101,455 + nemR NIAGMN_00625 0.23 -1.8 101,461 + nemR NIAGMN_00625 0.23 +1.0 101,509 + nemR NIAGMN_00625 0.32 +1.8 101,518 + nemR NIAGMN_00625 0.33 -1.2 101,518 + nemR NIAGMN_00625 0.33 -1.6 101,518 + nemR NIAGMN_00625 0.33 -3.3 101,519 - nemR NIAGMN_00625 0.33 +0.9 101,559 + nemR NIAGMN_00625 0.40 -0.5 101,576 + nemR NIAGMN_00625 0.43 -0.3 101,584 + nemR NIAGMN_00625 0.44 +0.2 101,587 + nemR NIAGMN_00625 0.45 -1.5 101,587 + nemR NIAGMN_00625 0.45 -1.1 101,645 + nemR NIAGMN_00625 0.54 -1.1 101,682 + nemR NIAGMN_00625 0.60 +0.8 101,888 + -0.8 101,888 + +1.8 101,956 - +1.7 102,515 - nemA NIAGMN_00630 0.51 +0.2 102,672 + nemA NIAGMN_00630 0.65 +0.7 102,721 + nemA NIAGMN_00630 0.70 +0.9 102,765 + nemA NIAGMN_00630 0.74 -0.6 102,765 + nemA NIAGMN_00630 0.74 -0.8 102,766 - nemA NIAGMN_00630 0.74 +2.5 102,799 + nemA NIAGMN_00630 0.77 -1.1 102,865 + nemA NIAGMN_00630 0.83 +2.2 102,984 + +0.9 103,009 + -1.2 103,030 + +0.1 103,149 - -0.0 103,224 - NIAGMN_00635 0.22 -0.1 103,308 + NIAGMN_00635 0.43 +0.4 103,308 + NIAGMN_00635 0.43 +1.7 103,347 + NIAGMN_00635 0.52 +1.9 103,364 + NIAGMN_00635 0.56 +1.5 103,373 + NIAGMN_00635 0.59 +2.5
Or see this region's nucleotide sequence