Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dsbG and ybdO are separated by 209 nucleotides ybdO and ybdN are separated by 146 nucleotides
MCAODC_26730: dsbG - thiol:disulfide interchange protein DsbG, at 2,060,750 to 2,061,496
dsbG
MCAODC_26735: ybdO - Uncharacterized HTH-type transcriptional regulator YbdO, at 2,061,706 to 2,062,608
ybdO
MCAODC_26740: ybdN - Uncharacterized protein YbdN, at 2,062,755 to 2,063,975
ybdN
Position (kb)
2061
2062
2063 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2060.901 kb on - strand, within dsbG at 2060.924 kb on + strand, within dsbG at 2060.924 kb on + strand, within dsbG at 2060.925 kb on - strand, within dsbG at 2060.925 kb on - strand, within dsbG at 2060.925 kb on - strand, within dsbG at 2060.941 kb on + strand, within dsbG at 2060.951 kb on - strand, within dsbG at 2060.960 kb on + strand, within dsbG at 2060.960 kb on + strand, within dsbG at 2060.961 kb on - strand, within dsbG at 2060.961 kb on - strand, within dsbG at 2060.961 kb on - strand, within dsbG at 2060.961 kb on - strand, within dsbG at 2060.966 kb on + strand, within dsbG at 2060.966 kb on + strand, within dsbG at 2060.966 kb on + strand, within dsbG at 2060.966 kb on + strand, within dsbG at 2060.967 kb on - strand, within dsbG at 2060.967 kb on - strand, within dsbG at 2060.992 kb on + strand, within dsbG at 2061.104 kb on + strand, within dsbG at 2061.105 kb on - strand, within dsbG at 2061.132 kb on - strand, within dsbG at 2061.183 kb on + strand, within dsbG at 2061.183 kb on + strand, within dsbG at 2061.183 kb on + strand, within dsbG at 2061.184 kb on - strand, within dsbG at 2061.184 kb on - strand, within dsbG at 2061.184 kb on - strand, within dsbG at 2061.330 kb on + strand, within dsbG at 2061.331 kb on - strand, within dsbG at 2061.410 kb on + strand, within dsbG at 2061.413 kb on + strand, within dsbG at 2061.413 kb on + strand, within dsbG at 2061.413 kb on + strand, within dsbG at 2061.413 kb on + strand, within dsbG at 2061.414 kb on - strand, within dsbG at 2061.521 kb on + strand at 2061.575 kb on - strand at 2061.588 kb on - strand at 2061.806 kb on + strand, within ybdO at 2061.808 kb on + strand, within ybdO at 2061.809 kb on - strand, within ybdO at 2061.809 kb on - strand, within ybdO at 2061.810 kb on + strand, within ybdO at 2061.917 kb on + strand, within ybdO at 2061.975 kb on - strand, within ybdO at 2062.041 kb on + strand, within ybdO at 2062.042 kb on - strand, within ybdO at 2062.044 kb on + strand, within ybdO at 2062.045 kb on - strand, within ybdO at 2062.102 kb on - strand, within ybdO at 2062.230 kb on - strand, within ybdO at 2062.243 kb on - strand, within ybdO at 2062.243 kb on - strand, within ybdO at 2062.713 kb on + strand at 2062.811 kb on + strand at 2062.812 kb on - strand at 2062.880 kb on - strand, within ybdN at 2062.973 kb on + strand, within ybdN at 2062.977 kb on + strand, within ybdN at 2062.977 kb on + strand, within ybdN at 2062.977 kb on + strand, within ybdN at 2062.977 kb on + strand, within ybdN at 2062.978 kb on - strand, within ybdN at 2063.002 kb on - strand, within ybdN at 2063.002 kb on - strand, within ybdN at 2063.045 kb on + strand, within ybdN at 2063.046 kb on - strand, within ybdN at 2063.070 kb on + strand, within ybdN at 2063.114 kb on - strand, within ybdN at 2063.164 kb on - strand, within ybdN at 2063.195 kb on - strand, within ybdN at 2063.269 kb on - strand, within ybdN at 2063.296 kb on + strand, within ybdN at 2063.321 kb on + strand, within ybdN at 2063.322 kb on - strand, within ybdN at 2063.354 kb on + strand, within ybdN at 2063.355 kb on - strand, within ybdN at 2063.355 kb on - strand, within ybdN at 2063.376 kb on + strand, within ybdN at 2063.377 kb on - strand, within ybdN at 2063.449 kb on + strand, within ybdN at 2063.450 kb on - strand, within ybdN at 2063.450 kb on - strand, within ybdN at 2063.481 kb on - strand, within ybdN at 2063.532 kb on + strand, within ybdN at 2063.533 kb on - strand, within ybdN at 2063.533 kb on - strand, within ybdN at 2063.564 kb on + strand, within ybdN at 2063.564 kb on + strand, within ybdN at 2063.564 kb on + strand, within ybdN
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 2,060,901 - dsbG MCAODC_26730 0.20 -0.2 2,060,924 + dsbG MCAODC_26730 0.23 -0.5 2,060,924 + dsbG MCAODC_26730 0.23 -0.0 2,060,925 - dsbG MCAODC_26730 0.23 -0.4 2,060,925 - dsbG MCAODC_26730 0.23 -1.2 2,060,925 - dsbG MCAODC_26730 0.23 -0.8 2,060,941 + dsbG MCAODC_26730 0.26 +0.8 2,060,951 - dsbG MCAODC_26730 0.27 -0.2 2,060,960 + dsbG MCAODC_26730 0.28 +1.1 2,060,960 + dsbG MCAODC_26730 0.28 -1.5 2,060,961 - dsbG MCAODC_26730 0.28 -0.8 2,060,961 - dsbG MCAODC_26730 0.28 +0.0 2,060,961 - dsbG MCAODC_26730 0.28 +0.4 2,060,961 - dsbG MCAODC_26730 0.28 -0.5 2,060,966 + dsbG MCAODC_26730 0.29 +0.8 2,060,966 + dsbG MCAODC_26730 0.29 +0.2 2,060,966 + dsbG MCAODC_26730 0.29 +0.1 2,060,966 + dsbG MCAODC_26730 0.29 -0.5 2,060,967 - dsbG MCAODC_26730 0.29 -2.3 2,060,967 - dsbG MCAODC_26730 0.29 -0.3 2,060,992 + dsbG MCAODC_26730 0.32 +0.1 2,061,104 + dsbG MCAODC_26730 0.47 -0.8 2,061,105 - dsbG MCAODC_26730 0.48 -0.1 2,061,132 - dsbG MCAODC_26730 0.51 -0.1 2,061,183 + dsbG MCAODC_26730 0.58 -0.4 2,061,183 + dsbG MCAODC_26730 0.58 -1.6 2,061,183 + dsbG MCAODC_26730 0.58 +0.4 2,061,184 - dsbG MCAODC_26730 0.58 +0.6 2,061,184 - dsbG MCAODC_26730 0.58 +0.9 2,061,184 - dsbG MCAODC_26730 0.58 +1.7 2,061,330 + dsbG MCAODC_26730 0.78 +0.1 2,061,331 - dsbG MCAODC_26730 0.78 -1.3 2,061,410 + dsbG MCAODC_26730 0.88 +0.1 2,061,413 + dsbG MCAODC_26730 0.89 +0.6 2,061,413 + dsbG MCAODC_26730 0.89 +0.9 2,061,413 + dsbG MCAODC_26730 0.89 +1.7 2,061,413 + dsbG MCAODC_26730 0.89 -0.9 2,061,414 - dsbG MCAODC_26730 0.89 +0.9 2,061,521 + +1.9 2,061,575 - +2.2 2,061,588 - +0.2 2,061,806 + ybdO MCAODC_26735 0.11 +1.8 2,061,808 + ybdO MCAODC_26735 0.11 +0.7 2,061,809 - ybdO MCAODC_26735 0.11 +1.6 2,061,809 - ybdO MCAODC_26735 0.11 -0.1 2,061,810 + ybdO MCAODC_26735 0.12 +1.1 2,061,917 + ybdO MCAODC_26735 0.23 +0.7 2,061,975 - ybdO MCAODC_26735 0.30 +0.4 2,062,041 + ybdO MCAODC_26735 0.37 -3.5 2,062,042 - ybdO MCAODC_26735 0.37 -1.0 2,062,044 + ybdO MCAODC_26735 0.37 +1.0 2,062,045 - ybdO MCAODC_26735 0.38 +0.8 2,062,102 - ybdO MCAODC_26735 0.44 -2.2 2,062,230 - ybdO MCAODC_26735 0.58 +0.1 2,062,243 - ybdO MCAODC_26735 0.59 -0.7 2,062,243 - ybdO MCAODC_26735 0.59 +1.5 2,062,713 + +1.8 2,062,811 + -0.5 2,062,812 - +0.1 2,062,880 - ybdN MCAODC_26740 0.10 -0.1 2,062,973 + ybdN MCAODC_26740 0.18 -0.8 2,062,977 + ybdN MCAODC_26740 0.18 +1.3 2,062,977 + ybdN MCAODC_26740 0.18 -0.3 2,062,977 + ybdN MCAODC_26740 0.18 +1.2 2,062,977 + ybdN MCAODC_26740 0.18 -3.5 2,062,978 - ybdN MCAODC_26740 0.18 +0.1 2,063,002 - ybdN MCAODC_26740 0.20 -2.6 2,063,002 - ybdN MCAODC_26740 0.20 +0.7 2,063,045 + ybdN MCAODC_26740 0.24 +1.7 2,063,046 - ybdN MCAODC_26740 0.24 -0.1 2,063,070 + ybdN MCAODC_26740 0.26 -0.5 2,063,114 - ybdN MCAODC_26740 0.29 +0.9 2,063,164 - ybdN MCAODC_26740 0.33 +1.6 2,063,195 - ybdN MCAODC_26740 0.36 +1.5 2,063,269 - ybdN MCAODC_26740 0.42 +1.1 2,063,296 + ybdN MCAODC_26740 0.44 +1.4 2,063,321 + ybdN MCAODC_26740 0.46 -0.2 2,063,322 - ybdN MCAODC_26740 0.46 -1.5 2,063,354 + ybdN MCAODC_26740 0.49 -1.1 2,063,355 - ybdN MCAODC_26740 0.49 -2.5 2,063,355 - ybdN MCAODC_26740 0.49 +0.1 2,063,376 + ybdN MCAODC_26740 0.51 -3.0 2,063,377 - ybdN MCAODC_26740 0.51 -0.7 2,063,449 + ybdN MCAODC_26740 0.57 -0.0 2,063,450 - ybdN MCAODC_26740 0.57 +0.2 2,063,450 - ybdN MCAODC_26740 0.57 -1.1 2,063,481 - ybdN MCAODC_26740 0.59 +0.8 2,063,532 + ybdN MCAODC_26740 0.64 -0.6 2,063,533 - ybdN MCAODC_26740 0.64 -0.1 2,063,533 - ybdN MCAODC_26740 0.64 -1.4 2,063,564 + ybdN MCAODC_26740 0.66 -0.5 2,063,564 + ybdN MCAODC_26740 0.66 -0.2 2,063,564 + ybdN MCAODC_26740 0.66 -0.4
Or see this region's nucleotide sequence