Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnp-IS3 and MCAODC_23690 are separated by 139 nucleotides MCAODC_23690 and tnpB are separated by 75 nucleotides tnpB and tnpB overlap by 4 nucleotides tnpB and MCAODC_23705 are separated by 49 nucleotides
MCAODC_23685: tnp-IS3 - IS3 family transposase, at 1,454,892 to 1,455,710
tnp-IS3
MCAODC_23690: MCAODC_23690 - DNA-binding protein, at 1,455,850 to 1,456,161
_23690
MCAODC_23695: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 1,456,237 to 1,456,617
tnpB
MCAODC_23700: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 1,456,614 to 1,456,961
tnpB
MCAODC_23705: MCAODC_23705 - IS66-like element ISEc8 family transposase, at 1,457,011 to 1,458,549
_23705
Position (kb) 1456
1457 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1455.673 kb on + strand at 1455.674 kb on - strand at 1455.674 kb on - strand at 1455.690 kb on + strand at 1455.691 kb on - strand at 1455.700 kb on - strand at 1455.700 kb on - strand at 1455.780 kb on + strand at 1455.780 kb on + strand at 1455.791 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,455,673 + -1.3 1,455,674 - -3.1 1,455,674 - -0.1 1,455,690 + +2.7 1,455,691 - -2.0 1,455,700 - -1.9 1,455,700 - +0.3 1,455,780 + -1.0 1,455,780 + +1.4 1,455,791 - -0.0
Or see this region's nucleotide sequence