Strain Fitness in Escherichia coli ECRC101 around MCAODC_23560

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_23555 and tnpB are separated by 30 nucleotidestnpB and MCAODC_23565 overlap by 4 nucleotidesMCAODC_23565 and MCAODC_23570 are separated by 319 nucleotides MCAODC_23555: MCAODC_23555 - IS66-like element IS682 family transposase, at 1,436,881 to 1,438,494 _23555 MCAODC_23560: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 1,438,525 to 1,438,875 tnpB MCAODC_23565: MCAODC_23565 - putative transposase of insertion sequence IS682, at 1,438,872 to 1,439,297 _23565 MCAODC_23570: MCAODC_23570 - IS66 family transposase, at 1,439,617 to 1,440,102 _23570 Position (kb) 1438 1439Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1437.626 kb on + strand, within MCAODC_23555at 1437.626 kb on + strand, within MCAODC_23555at 1437.627 kb on - strand, within MCAODC_23555at 1437.627 kb on - strand, within MCAODC_23555at 1437.754 kb on + strand, within MCAODC_23555at 1437.840 kb on - strand, within MCAODC_23555at 1437.913 kb on + strand, within MCAODC_23555at 1437.944 kb on - strand, within MCAODC_23555at 1437.944 kb on - strand, within MCAODC_23555at 1437.944 kb on - strand, within MCAODC_23555at 1437.946 kb on - strand, within MCAODC_23555at 1437.946 kb on - strand, within MCAODC_23555at 1438.103 kb on - strand, within MCAODC_23555at 1438.713 kb on + strand, within tnpBat 1438.743 kb on + strand, within tnpBat 1439.031 kb on - strand, within MCAODC_23565at 1439.055 kb on + strand, within MCAODC_23565at 1439.071 kb on - strand, within MCAODC_23565at 1439.280 kb on + strandat 1439.311 kb on + strandat 1439.312 kb on - strandat 1439.331 kb on + strandat 1439.331 kb on + strandat 1439.332 kb on - strandat 1439.332 kb on - strandat 1439.343 kb on - strandat 1439.351 kb on - strandat 1439.361 kb on + strandat 1439.361 kb on + strandat 1439.362 kb on - strandat 1439.498 kb on - strandat 1439.507 kb on - strandat 1439.535 kb on + strandat 1439.538 kb on + strandat 1439.538 kb on + strandat 1439.587 kb on + strandat 1439.587 kb on + strandat 1439.707 kb on + strand, within MCAODC_23570at 1439.800 kb on + strand, within MCAODC_23570at 1439.800 kb on + strand, within MCAODC_23570at 1439.800 kb on + strand, within MCAODC_23570at 1439.868 kb on + strand, within MCAODC_23570at 1439.868 kb on + strand, within MCAODC_23570at 1439.868 kb on + strand, within MCAODC_23570at 1439.869 kb on - strand, within MCAODC_23570

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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1,437,626 + MCAODC_23555 0.46 +1.8
1,437,626 + MCAODC_23555 0.46 -2.4
1,437,627 - MCAODC_23555 0.46 -0.9
1,437,627 - MCAODC_23555 0.46 +0.2
1,437,754 + MCAODC_23555 0.54 -0.2
1,437,840 - MCAODC_23555 0.59 +0.4
1,437,913 + MCAODC_23555 0.64 -0.1
1,437,944 - MCAODC_23555 0.66 +0.5
1,437,944 - MCAODC_23555 0.66 +0.6
1,437,944 - MCAODC_23555 0.66 -1.0
1,437,946 - MCAODC_23555 0.66 +0.5
1,437,946 - MCAODC_23555 0.66 +2.8
1,438,103 - MCAODC_23555 0.76 -0.2
1,438,713 + tnpB MCAODC_23560 0.54 +0.9
1,438,743 + tnpB MCAODC_23560 0.62 +0.7
1,439,031 - MCAODC_23565 0.37 +0.2
1,439,055 + MCAODC_23565 0.43 +1.1
1,439,071 - MCAODC_23565 0.47 +1.8
1,439,280 + -0.8
1,439,311 + +0.0
1,439,312 - +0.2
1,439,331 + -0.1
1,439,331 + -2.3
1,439,332 - -1.1
1,439,332 - +0.2
1,439,343 - -0.3
1,439,351 - +0.3
1,439,361 + -0.2
1,439,361 + +0.5
1,439,362 - -1.9
1,439,498 - +1.2
1,439,507 - -0.1
1,439,535 + +0.1
1,439,538 + -0.8
1,439,538 + -3.5
1,439,587 + -0.3
1,439,587 + +0.7
1,439,707 + MCAODC_23570 0.19 -0.2
1,439,800 + MCAODC_23570 0.38 +0.2
1,439,800 + MCAODC_23570 0.38 -2.9
1,439,800 + MCAODC_23570 0.38 -0.9
1,439,868 + MCAODC_23570 0.52 +1.1
1,439,868 + MCAODC_23570 0.52 -3.0
1,439,868 + MCAODC_23570 0.52 +1.3
1,439,869 - MCAODC_23570 0.52 -1.6

Or see this region's nucleotide sequence