Strain Fitness in Escherichia coli ECRC101 around MCAODC_23555

Experiment: Sodium-DL-Lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nttnpB and MCAODC_23550 are separated by 81 nucleotidesMCAODC_23550 and MCAODC_23555 are separated by 3 nucleotidesMCAODC_23555 and tnpB are separated by 30 nucleotidestnpB and MCAODC_23565 overlap by 4 nucleotides MCAODC_23545: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 1,435,597 to 1,435,938 tnpB MCAODC_23550: MCAODC_23550 - IS66 family transposase, at 1,436,020 to 1,436,877 _23550 MCAODC_23555: MCAODC_23555 - IS66-like element IS682 family transposase, at 1,436,881 to 1,438,494 _23555 MCAODC_23560: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 1,438,525 to 1,438,875 tnpB MCAODC_23565: MCAODC_23565 - putative transposase of insertion sequence IS682, at 1,438,872 to 1,439,297 _23565 Position (kb) 1436 1437 1438 1439Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1435.937 kb on - strandat 1436.008 kb on - strandat 1436.040 kb on + strandat 1436.041 kb on - strandat 1436.323 kb on - strand, within MCAODC_23550at 1436.444 kb on - strand, within MCAODC_23550at 1436.446 kb on - strand, within MCAODC_23550at 1436.473 kb on + strand, within MCAODC_23550at 1436.488 kb on + strand, within MCAODC_23550at 1436.489 kb on - strand, within MCAODC_23550at 1436.539 kb on - strand, within MCAODC_23550at 1436.539 kb on - strand, within MCAODC_23550at 1436.668 kb on - strand, within MCAODC_23550at 1436.668 kb on - strand, within MCAODC_23550at 1436.754 kb on + strand, within MCAODC_23550at 1436.834 kb on - strandat 1436.883 kb on - strandat 1436.883 kb on - strandat 1436.883 kb on - strandat 1436.951 kb on - strandat 1437.067 kb on - strand, within MCAODC_23555at 1437.118 kb on - strand, within MCAODC_23555at 1437.118 kb on - strand, within MCAODC_23555at 1437.152 kb on + strand, within MCAODC_23555at 1437.153 kb on - strand, within MCAODC_23555at 1437.153 kb on - strand, within MCAODC_23555at 1437.183 kb on - strand, within MCAODC_23555at 1437.223 kb on - strand, within MCAODC_23555at 1437.223 kb on - strand, within MCAODC_23555at 1437.263 kb on - strand, within MCAODC_23555at 1437.395 kb on + strand, within MCAODC_23555at 1437.626 kb on + strand, within MCAODC_23555at 1437.626 kb on + strand, within MCAODC_23555at 1437.627 kb on - strand, within MCAODC_23555at 1437.627 kb on - strand, within MCAODC_23555at 1437.754 kb on + strand, within MCAODC_23555at 1437.840 kb on - strand, within MCAODC_23555at 1437.913 kb on + strand, within MCAODC_23555at 1437.944 kb on - strand, within MCAODC_23555at 1437.944 kb on - strand, within MCAODC_23555at 1437.944 kb on - strand, within MCAODC_23555at 1437.946 kb on - strand, within MCAODC_23555at 1437.946 kb on - strand, within MCAODC_23555at 1438.103 kb on - strand, within MCAODC_23555at 1438.713 kb on + strand, within tnpBat 1438.743 kb on + strand, within tnpBat 1439.031 kb on - strand, within MCAODC_23565at 1439.055 kb on + strand, within MCAODC_23565at 1439.071 kb on - strand, within MCAODC_23565at 1439.280 kb on + strandat 1439.311 kb on + strandat 1439.312 kb on - strandat 1439.331 kb on + strandat 1439.331 kb on + strandat 1439.332 kb on - strandat 1439.332 kb on - strandat 1439.343 kb on - strandat 1439.351 kb on - strandat 1439.361 kb on + strandat 1439.361 kb on + strandat 1439.362 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
remove
1,435,937 - +0.4
1,436,008 - -0.3
1,436,040 + -1.3
1,436,041 - -0.5
1,436,323 - MCAODC_23550 0.35 -0.6
1,436,444 - MCAODC_23550 0.49 +0.8
1,436,446 - MCAODC_23550 0.50 +0.4
1,436,473 + MCAODC_23550 0.53 +2.5
1,436,488 + MCAODC_23550 0.55 -0.6
1,436,489 - MCAODC_23550 0.55 +1.0
1,436,539 - MCAODC_23550 0.60 -0.1
1,436,539 - MCAODC_23550 0.60 -0.8
1,436,668 - MCAODC_23550 0.76 -0.8
1,436,668 - MCAODC_23550 0.76 -1.4
1,436,754 + MCAODC_23550 0.86 -0.1
1,436,834 - +1.5
1,436,883 - +0.3
1,436,883 - -0.6
1,436,883 - -1.0
1,436,951 - +0.2
1,437,067 - MCAODC_23555 0.12 -0.2
1,437,118 - MCAODC_23555 0.15 -0.6
1,437,118 - MCAODC_23555 0.15 -3.0
1,437,152 + MCAODC_23555 0.17 +1.2
1,437,153 - MCAODC_23555 0.17 +1.6
1,437,153 - MCAODC_23555 0.17 -0.3
1,437,183 - MCAODC_23555 0.19 -0.4
1,437,223 - MCAODC_23555 0.21 -1.9
1,437,223 - MCAODC_23555 0.21 +0.0
1,437,263 - MCAODC_23555 0.24 +1.1
1,437,395 + MCAODC_23555 0.32 +0.2
1,437,626 + MCAODC_23555 0.46 +1.8
1,437,626 + MCAODC_23555 0.46 -2.4
1,437,627 - MCAODC_23555 0.46 -0.9
1,437,627 - MCAODC_23555 0.46 +0.2
1,437,754 + MCAODC_23555 0.54 -0.2
1,437,840 - MCAODC_23555 0.59 +0.4
1,437,913 + MCAODC_23555 0.64 -0.1
1,437,944 - MCAODC_23555 0.66 +0.5
1,437,944 - MCAODC_23555 0.66 +0.6
1,437,944 - MCAODC_23555 0.66 -1.0
1,437,946 - MCAODC_23555 0.66 +0.5
1,437,946 - MCAODC_23555 0.66 +2.8
1,438,103 - MCAODC_23555 0.76 -0.2
1,438,713 + tnpB MCAODC_23560 0.54 +0.9
1,438,743 + tnpB MCAODC_23560 0.62 +0.7
1,439,031 - MCAODC_23565 0.37 +0.2
1,439,055 + MCAODC_23565 0.43 +1.1
1,439,071 - MCAODC_23565 0.47 +1.8
1,439,280 + -0.8
1,439,311 + +0.0
1,439,312 - +0.2
1,439,331 + -0.1
1,439,331 + -2.3
1,439,332 - -1.1
1,439,332 - +0.2
1,439,343 - -0.3
1,439,351 - +0.3
1,439,361 + -0.2
1,439,361 + +0.5
1,439,362 - -1.9

Or see this region's nucleotide sequence