Strain Fitness in Escherichia coli ECRC101 around MCAODC_22855

Experiment: Sodium-DL-Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sodium-DL-Lactate
1,313,044	+	comR	MCAODC_22845	0.84	-0.4
1,313,050	+	comR	MCAODC_22845	0.85	+0.0
1,313,051	-	comR	MCAODC_22845	0.85	-1.6
1,313,053	+	comR	MCAODC_22845	0.85	-0.3
1,313,208	-				+0.2
1,313,208	-				-1.6
1,313,218	+				-0.5
1,313,220	+				+1.3
1,313,253	-				-1.4
1,313,321	-	ycfJ	MCAODC_22850	0.19	-2.0
1,313,360	-	ycfJ	MCAODC_22850	0.26	-2.8
1,313,393	-	ycfJ	MCAODC_22850	0.33	-0.3
1,313,750	+				+0.7
1,313,763	-				+1.4
1,313,780	+				-0.7
1,313,780	+				-0.1
1,313,815	-				+1.5
1,313,854	-				-1.6
1,313,857	+				-6.1
1,313,976	-				-0.6
1,313,976	-				+0.4
1,314,021	+				-0.2
1,314,021	+				+1.5
1,314,052	-				+3.3
1,314,057	-				+0.0
1,314,097	-				+0.9
1,314,098	+				-0.4
1,314,098	+				+0.3
1,314,099	-				-0.3
1,314,099	-				+0.2
1,314,099	-				-0.6
1,314,099	-				+1.0
1,314,099	-				+0.9
1,314,099	-				-0.8
1,314,099	-				+1.0
1,314,101	-				-0.4
1,314,352	-	ndh	MCAODC_22855	0.28	-1.6
1,314,356	+	ndh	MCAODC_22855	0.29	-1.2
1,314,356	+	ndh	MCAODC_22855	0.29	-0.8
1,314,357	-	ndh	MCAODC_22855	0.29	+1.7
1,314,476	-	ndh	MCAODC_22855	0.38	+2.0
1,314,497	+	ndh	MCAODC_22855	0.39	-0.6
1,314,606	+	ndh	MCAODC_22855	0.48	-1.7
1,314,606	+	ndh	MCAODC_22855	0.48	-1.2
1,314,606	+	ndh	MCAODC_22855	0.48	-2.9
1,314,630	+	ndh	MCAODC_22855	0.50	-0.5
1,314,646	+	ndh	MCAODC_22855	0.51	+0.8
1,314,647	-	ndh	MCAODC_22855	0.51	+0.6
1,314,656	-	ndh	MCAODC_22855	0.52	+0.6
1,314,945	-	ndh	MCAODC_22855	0.74	-2.2
1,315,030	-	ndh	MCAODC_22855	0.80	+0.8
1,315,210	-				-0.7
1,315,282	-				+0.7
1,315,282	-				-2.7
1,315,282	-				+1.2
1,315,338	+				-0.9
1,315,339	-				+1.2
1,315,530	+				-0.5
1,315,530	+				-3.0
1,315,544	+				-0.4
1,315,544	+				-0.9
1,315,544	+				-0.3
1,315,544	+				-1.2
1,315,544	+				+1.2
1,315,544	+				-0.3
1,315,544	+				+0.7
1,315,544	+				+0.7
1,315,667	-				-0.2
1,315,710	+				+0.5
1,315,711	-				-1.4
1,315,735	-				+2.9
1,315,831	-	ycfP	MCAODC_22860	0.27	+2.5
1,315,890	+	ycfP	MCAODC_22860	0.37	-0.6
1,315,891	-	ycfP	MCAODC_22860	0.38	-0.6
1,315,891	-	ycfP	MCAODC_22860	0.38	-0.3
1,315,907	+	ycfP	MCAODC_22860	0.41	-0.9
1,315,959	+	ycfP	MCAODC_22860	0.50	-1.2
1,315,960	-	ycfP	MCAODC_22860	0.50	+0.1
1,316,104	-	ycfP	MCAODC_22860	0.77	-1.0
1,316,104	-	ycfP	MCAODC_22860	0.77	+0.5
1,316,104	-	ycfP	MCAODC_22860	0.77	-1.5
1,316,135	-	ycfP	MCAODC_22860	0.83	-0.5
1,316,144	-	ycfP	MCAODC_22860	0.84	-2.5
1,316,171	-	ycfP	MCAODC_22860	0.89	+0.8
1,316,219	+				+0.3
1,316,223	+				-2.2
1,316,223	+				+0.4
1,316,224	-				-0.3
1,316,242	+				-1.2
1,316,242	+				+2.0