Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt metG and MCAODC_21160 are separated by 140 nucleotides MCAODC_21160 and MCAODC_21165 are separated by 189 nucleotides
MCAODC_21155: metG - methionine--tRNA ligase, at 1,029,898 to 1,031,931
metG
MCAODC_21160: MCAODC_21160 - WGR domain-containing protein, at 1,032,072 to 1,032,800
_21160
MCAODC_21165: MCAODC_21165 - regulator, at 1,032,990 to 1,035,881
_21165
Position (kb)
1032
1033 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1031.538 kb on + strand, within metG at 1031.571 kb on + strand, within metG at 1031.929 kb on + strand at 1031.929 kb on + strand at 1031.929 kb on + strand at 1032.021 kb on + strand at 1032.022 kb on - strand at 1032.022 kb on - strand at 1032.022 kb on - strand at 1032.022 kb on - strand at 1032.022 kb on - strand at 1032.025 kb on + strand at 1032.025 kb on + strand at 1032.088 kb on - strand at 1032.088 kb on - strand at 1032.146 kb on + strand, within MCAODC_21160 at 1032.467 kb on - strand, within MCAODC_21160 at 1032.467 kb on - strand, within MCAODC_21160 at 1032.476 kb on + strand, within MCAODC_21160 at 1032.498 kb on + strand, within MCAODC_21160 at 1032.640 kb on - strand, within MCAODC_21160 at 1032.667 kb on + strand, within MCAODC_21160 at 1032.667 kb on + strand, within MCAODC_21160 at 1032.667 kb on + strand, within MCAODC_21160 at 1032.668 kb on - strand, within MCAODC_21160 at 1032.668 kb on - strand, within MCAODC_21160 at 1032.729 kb on + strand at 1032.730 kb on - strand at 1032.739 kb on + strand at 1032.770 kb on + strand at 1032.791 kb on - strand at 1032.794 kb on + strand at 1032.795 kb on - strand at 1032.795 kb on - strand at 1032.811 kb on + strand at 1032.812 kb on - strand at 1032.859 kb on + strand at 1032.863 kb on + strand at 1032.864 kb on - strand at 1032.953 kb on + strand at 1032.953 kb on + strand at 1032.955 kb on + strand at 1032.955 kb on + strand at 1032.955 kb on + strand at 1032.956 kb on - strand at 1032.956 kb on - strand at 1032.956 kb on - strand at 1032.956 kb on - strand at 1032.956 kb on - strand at 1032.956 kb on - strand at 1032.956 kb on - strand at 1032.961 kb on + strand at 1032.962 kb on - strand at 1032.962 kb on - strand at 1032.962 kb on - strand at 1032.966 kb on + strand at 1033.022 kb on + strand at 1033.116 kb on - strand at 1033.133 kb on - strand at 1033.306 kb on + strand, within MCAODC_21165 at 1033.306 kb on + strand, within MCAODC_21165 at 1033.307 kb on - strand, within MCAODC_21165 at 1033.355 kb on + strand, within MCAODC_21165 at 1033.355 kb on + strand, within MCAODC_21165 at 1033.356 kb on - strand, within MCAODC_21165 at 1033.369 kb on + strand, within MCAODC_21165 at 1033.429 kb on + strand, within MCAODC_21165 at 1033.429 kb on + strand, within MCAODC_21165 at 1033.430 kb on - strand, within MCAODC_21165 at 1033.430 kb on - strand, within MCAODC_21165 at 1033.432 kb on + strand, within MCAODC_21165 at 1033.433 kb on - strand, within MCAODC_21165 at 1033.477 kb on + strand, within MCAODC_21165 at 1033.478 kb on - strand, within MCAODC_21165 at 1033.518 kb on + strand, within MCAODC_21165 at 1033.519 kb on - strand, within MCAODC_21165 at 1033.533 kb on - strand, within MCAODC_21165 at 1033.674 kb on + strand, within MCAODC_21165 at 1033.675 kb on - strand, within MCAODC_21165 at 1033.675 kb on - strand, within MCAODC_21165 at 1033.778 kb on - strand, within MCAODC_21165 at 1033.780 kb on + strand, within MCAODC_21165 at 1033.788 kb on - strand, within MCAODC_21165
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 1,031,538 + metG MCAODC_21155 0.81 +0.2 1,031,571 + metG MCAODC_21155 0.82 -1.8 1,031,929 + +2.5 1,031,929 + -1.5 1,031,929 + -0.1 1,032,021 + -0.4 1,032,022 - +0.4 1,032,022 - -0.3 1,032,022 - -0.5 1,032,022 - +0.5 1,032,022 - -1.8 1,032,025 + +0.6 1,032,025 + -1.8 1,032,088 - -0.4 1,032,088 - +0.3 1,032,146 + MCAODC_21160 0.10 -2.7 1,032,467 - MCAODC_21160 0.54 +1.4 1,032,467 - MCAODC_21160 0.54 +0.6 1,032,476 + MCAODC_21160 0.55 -0.7 1,032,498 + MCAODC_21160 0.58 +0.8 1,032,640 - MCAODC_21160 0.78 +2.2 1,032,667 + MCAODC_21160 0.82 +1.6 1,032,667 + MCAODC_21160 0.82 -0.2 1,032,667 + MCAODC_21160 0.82 +0.2 1,032,668 - MCAODC_21160 0.82 -0.6 1,032,668 - MCAODC_21160 0.82 -3.5 1,032,729 + -0.3 1,032,730 - -0.4 1,032,739 + -1.3 1,032,770 + -0.8 1,032,791 - -1.0 1,032,794 + -1.2 1,032,795 - -0.7 1,032,795 - -2.8 1,032,811 + +0.2 1,032,812 - -0.2 1,032,859 + -0.6 1,032,863 + -0.4 1,032,864 - +0.2 1,032,953 + -0.5 1,032,953 + -0.2 1,032,955 + +0.6 1,032,955 + +0.0 1,032,955 + -0.2 1,032,956 - +0.1 1,032,956 - +0.7 1,032,956 - -0.9 1,032,956 - -2.0 1,032,956 - -1.7 1,032,956 - -1.0 1,032,956 - -0.8 1,032,961 + +1.1 1,032,962 - +0.0 1,032,962 - -0.8 1,032,962 - +0.4 1,032,966 + +1.2 1,033,022 + -0.3 1,033,116 - -2.8 1,033,133 - -0.5 1,033,306 + MCAODC_21165 0.11 +0.9 1,033,306 + MCAODC_21165 0.11 +0.4 1,033,307 - MCAODC_21165 0.11 +0.0 1,033,355 + MCAODC_21165 0.13 +1.4 1,033,355 + MCAODC_21165 0.13 +0.2 1,033,356 - MCAODC_21165 0.13 -1.7 1,033,369 + MCAODC_21165 0.13 +0.5 1,033,429 + MCAODC_21165 0.15 +0.8 1,033,429 + MCAODC_21165 0.15 -0.2 1,033,430 - MCAODC_21165 0.15 -1.0 1,033,430 - MCAODC_21165 0.15 +0.5 1,033,432 + MCAODC_21165 0.15 -0.3 1,033,433 - MCAODC_21165 0.15 +0.7 1,033,477 + MCAODC_21165 0.17 -0.7 1,033,478 - MCAODC_21165 0.17 +0.4 1,033,518 + MCAODC_21165 0.18 +0.1 1,033,519 - MCAODC_21165 0.18 -0.4 1,033,533 - MCAODC_21165 0.19 -0.1 1,033,674 + MCAODC_21165 0.24 +0.2 1,033,675 - MCAODC_21165 0.24 -1.5 1,033,675 - MCAODC_21165 0.24 -0.2 1,033,778 - MCAODC_21165 0.27 -0.2 1,033,780 + MCAODC_21165 0.27 +0.5 1,033,788 - MCAODC_21165 0.28 +0.3
Or see this region's nucleotide sequence