Strain Fitness in Escherichia coli ECRC101 around MCAODC_21160

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmetG and MCAODC_21160 are separated by 140 nucleotidesMCAODC_21160 and MCAODC_21165 are separated by 189 nucleotides MCAODC_21155: metG - methionine--tRNA ligase, at 1,029,898 to 1,031,931 metG MCAODC_21160: MCAODC_21160 - WGR domain-containing protein, at 1,032,072 to 1,032,800 _21160 MCAODC_21165: MCAODC_21165 - regulator, at 1,032,990 to 1,035,881 _21165 Position (kb) 1032 1033Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1031.538 kb on + strand, within metGat 1031.571 kb on + strand, within metGat 1031.929 kb on + strandat 1031.929 kb on + strandat 1031.929 kb on + strandat 1032.021 kb on + strandat 1032.022 kb on - strandat 1032.022 kb on - strandat 1032.022 kb on - strandat 1032.022 kb on - strandat 1032.022 kb on - strandat 1032.025 kb on + strandat 1032.025 kb on + strandat 1032.088 kb on - strandat 1032.088 kb on - strandat 1032.146 kb on + strand, within MCAODC_21160at 1032.467 kb on - strand, within MCAODC_21160at 1032.467 kb on - strand, within MCAODC_21160at 1032.476 kb on + strand, within MCAODC_21160at 1032.498 kb on + strand, within MCAODC_21160at 1032.640 kb on - strand, within MCAODC_21160at 1032.667 kb on + strand, within MCAODC_21160at 1032.667 kb on + strand, within MCAODC_21160at 1032.667 kb on + strand, within MCAODC_21160at 1032.668 kb on - strand, within MCAODC_21160at 1032.668 kb on - strand, within MCAODC_21160at 1032.729 kb on + strandat 1032.730 kb on - strandat 1032.739 kb on + strandat 1032.770 kb on + strandat 1032.791 kb on - strandat 1032.794 kb on + strandat 1032.795 kb on - strandat 1032.795 kb on - strandat 1032.811 kb on + strandat 1032.812 kb on - strandat 1032.859 kb on + strandat 1032.863 kb on + strandat 1032.864 kb on - strandat 1032.953 kb on + strandat 1032.953 kb on + strandat 1032.955 kb on + strandat 1032.955 kb on + strandat 1032.955 kb on + strandat 1032.956 kb on - strandat 1032.956 kb on - strandat 1032.956 kb on - strandat 1032.956 kb on - strandat 1032.956 kb on - strandat 1032.956 kb on - strandat 1032.956 kb on - strandat 1032.961 kb on + strandat 1032.962 kb on - strandat 1032.962 kb on - strandat 1032.962 kb on - strandat 1032.966 kb on + strandat 1033.022 kb on + strandat 1033.116 kb on - strandat 1033.133 kb on - strandat 1033.306 kb on + strand, within MCAODC_21165at 1033.306 kb on + strand, within MCAODC_21165at 1033.307 kb on - strand, within MCAODC_21165at 1033.355 kb on + strand, within MCAODC_21165at 1033.355 kb on + strand, within MCAODC_21165at 1033.356 kb on - strand, within MCAODC_21165at 1033.369 kb on + strand, within MCAODC_21165at 1033.429 kb on + strand, within MCAODC_21165at 1033.429 kb on + strand, within MCAODC_21165at 1033.430 kb on - strand, within MCAODC_21165at 1033.430 kb on - strand, within MCAODC_21165at 1033.432 kb on + strand, within MCAODC_21165at 1033.433 kb on - strand, within MCAODC_21165at 1033.477 kb on + strand, within MCAODC_21165at 1033.478 kb on - strand, within MCAODC_21165at 1033.518 kb on + strand, within MCAODC_21165at 1033.519 kb on - strand, within MCAODC_21165at 1033.533 kb on - strand, within MCAODC_21165at 1033.674 kb on + strand, within MCAODC_21165at 1033.675 kb on - strand, within MCAODC_21165at 1033.675 kb on - strand, within MCAODC_21165at 1033.778 kb on - strand, within MCAODC_21165at 1033.780 kb on + strand, within MCAODC_21165at 1033.788 kb on - strand, within MCAODC_21165

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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1,031,538 + metG MCAODC_21155 0.81 +0.2
1,031,571 + metG MCAODC_21155 0.82 -1.8
1,031,929 + +2.5
1,031,929 + -1.5
1,031,929 + -0.1
1,032,021 + -0.4
1,032,022 - +0.4
1,032,022 - -0.3
1,032,022 - -0.5
1,032,022 - +0.5
1,032,022 - -1.8
1,032,025 + +0.6
1,032,025 + -1.8
1,032,088 - -0.4
1,032,088 - +0.3
1,032,146 + MCAODC_21160 0.10 -2.7
1,032,467 - MCAODC_21160 0.54 +1.4
1,032,467 - MCAODC_21160 0.54 +0.6
1,032,476 + MCAODC_21160 0.55 -0.7
1,032,498 + MCAODC_21160 0.58 +0.8
1,032,640 - MCAODC_21160 0.78 +2.2
1,032,667 + MCAODC_21160 0.82 +1.6
1,032,667 + MCAODC_21160 0.82 -0.2
1,032,667 + MCAODC_21160 0.82 +0.2
1,032,668 - MCAODC_21160 0.82 -0.6
1,032,668 - MCAODC_21160 0.82 -3.5
1,032,729 + -0.3
1,032,730 - -0.4
1,032,739 + -1.3
1,032,770 + -0.8
1,032,791 - -1.0
1,032,794 + -1.2
1,032,795 - -0.7
1,032,795 - -2.8
1,032,811 + +0.2
1,032,812 - -0.2
1,032,859 + -0.6
1,032,863 + -0.4
1,032,864 - +0.2
1,032,953 + -0.5
1,032,953 + -0.2
1,032,955 + +0.6
1,032,955 + +0.0
1,032,955 + -0.2
1,032,956 - +0.1
1,032,956 - +0.7
1,032,956 - -0.9
1,032,956 - -2.0
1,032,956 - -1.7
1,032,956 - -1.0
1,032,956 - -0.8
1,032,961 + +1.1
1,032,962 - +0.0
1,032,962 - -0.8
1,032,962 - +0.4
1,032,966 + +1.2
1,033,022 + -0.3
1,033,116 - -2.8
1,033,133 - -0.5
1,033,306 + MCAODC_21165 0.11 +0.9
1,033,306 + MCAODC_21165 0.11 +0.4
1,033,307 - MCAODC_21165 0.11 +0.0
1,033,355 + MCAODC_21165 0.13 +1.4
1,033,355 + MCAODC_21165 0.13 +0.2
1,033,356 - MCAODC_21165 0.13 -1.7
1,033,369 + MCAODC_21165 0.13 +0.5
1,033,429 + MCAODC_21165 0.15 +0.8
1,033,429 + MCAODC_21165 0.15 -0.2
1,033,430 - MCAODC_21165 0.15 -1.0
1,033,430 - MCAODC_21165 0.15 +0.5
1,033,432 + MCAODC_21165 0.15 -0.3
1,033,433 - MCAODC_21165 0.15 +0.7
1,033,477 + MCAODC_21165 0.17 -0.7
1,033,478 - MCAODC_21165 0.17 +0.4
1,033,518 + MCAODC_21165 0.18 +0.1
1,033,519 - MCAODC_21165 0.18 -0.4
1,033,533 - MCAODC_21165 0.19 -0.1
1,033,674 + MCAODC_21165 0.24 +0.2
1,033,675 - MCAODC_21165 0.24 -1.5
1,033,675 - MCAODC_21165 0.24 -0.2
1,033,778 - MCAODC_21165 0.27 -0.2
1,033,780 + MCAODC_21165 0.27 +0.5
1,033,788 - MCAODC_21165 0.28 +0.3

Or see this region's nucleotide sequence