Strain Fitness in Escherichia coli ECRC101 around MCAODC_20020

Experiment: Sodium-DL-Lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMCAODC_20005 and MCAODC_20010 are separated by 4 nucleotidesMCAODC_20010 and tnp-IS3 are separated by 319 nucleotidestnp-IS3 and tnp-IS3 overlap by 1 nucleotidestnp-IS3 and MCAODC_20025 are separated by 81 nucleotides MCAODC_20005: MCAODC_20005 - DUF1327 domain-containing protein, at 821,861 to 822,193 _20005 MCAODC_20010: MCAODC_20010 - lysis protein, at 822,198 to 822,404 _20010 MCAODC_20015: tnp-IS3 - IS3 family transposase, at 822,724 to 823,050 tnp-IS3 MCAODC_20020: tnp-IS3 - IS3 family transposase, at 823,050 to 823,937 tnp-IS3 MCAODC_20025: MCAODC_20025 - 9-O-acetyl-N-acetylneuraminic acid deacetylase, at 824,019 to 825,869 _20025 Position (kb) 823 824Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 822.444 kb on + strandat 822.570 kb on - strandat 822.582 kb on - strandat 822.582 kb on - strandat 822.582 kb on - strandat 822.628 kb on + strandat 822.628 kb on + strandat 822.630 kb on + strandat 822.630 kb on + strandat 822.630 kb on + strandat 822.630 kb on + strandat 822.630 kb on + strandat 822.630 kb on + strandat 822.631 kb on - strandat 822.631 kb on - strandat 822.631 kb on - strandat 822.631 kb on - strandat 822.631 kb on - strandat 822.631 kb on - strandat 822.631 kb on - strandat 822.634 kb on + strandat 822.634 kb on + strandat 822.634 kb on + strandat 822.634 kb on + strandat 822.635 kb on - strandat 822.635 kb on - strandat 822.635 kb on - strandat 822.635 kb on - strandat 822.652 kb on + strandat 822.652 kb on + strandat 822.653 kb on - strandat 822.661 kb on + strandat 822.697 kb on - strandat 823.947 kb on + strandat 823.981 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
remove
822,444 + -0.1
822,570 - -0.9
822,582 - -1.1
822,582 - +0.3
822,582 - -2.0
822,628 + -0.7
822,628 + -0.2
822,630 + -1.2
822,630 + +0.6
822,630 + -0.9
822,630 + +1.2
822,630 + +0.0
822,630 + +1.1
822,631 - -0.7
822,631 - -0.4
822,631 - -0.5
822,631 - +0.4
822,631 - -0.7
822,631 - +1.0
822,631 - +0.2
822,634 + +1.2
822,634 + -0.4
822,634 + -0.1
822,634 + -0.8
822,635 - -0.1
822,635 - -0.3
822,635 - +3.0
822,635 - -3.2
822,652 + -3.4
822,652 + +0.5
822,653 - +0.2
822,661 + +1.3
822,697 - -0.0
823,947 + +3.8
823,981 + -0.7

Or see this region's nucleotide sequence