Strain Fitness in Escherichia coli ECRC101 around MCAODC_19815

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_19810 and MCAODC_19815 overlap by 34 nucleotidesMCAODC_19815 and hchA are separated by 591 nucleotides MCAODC_19810: MCAODC_19810 - Putative outer membrane protein, at 787,805 to 788,449 _19810 MCAODC_19815: MCAODC_19815 - Outer membrane protein, at 788,416 to 788,991 _19815 MCAODC_19820: hchA - protein deglycase HchA, at 789,583 to 790,434 hchA Position (kb) 788 789Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 787.762 kb on + strandat 787.931 kb on + strand, within MCAODC_19810at 787.948 kb on + strand, within MCAODC_19810at 787.971 kb on - strand, within MCAODC_19810at 788.042 kb on - strand, within MCAODC_19810at 788.078 kb on - strand, within MCAODC_19810at 788.128 kb on + strand, within MCAODC_19810at 788.138 kb on + strand, within MCAODC_19810at 788.146 kb on + strand, within MCAODC_19810at 788.147 kb on - strand, within MCAODC_19810at 788.151 kb on - strand, within MCAODC_19810at 788.160 kb on + strand, within MCAODC_19810at 788.162 kb on + strand, within MCAODC_19810at 788.162 kb on + strand, within MCAODC_19810at 788.162 kb on + strand, within MCAODC_19810at 788.169 kb on + strand, within MCAODC_19810at 788.209 kb on + strand, within MCAODC_19810at 788.209 kb on + strand, within MCAODC_19810at 788.209 kb on + strand, within MCAODC_19810at 788.213 kb on + strand, within MCAODC_19810at 788.213 kb on + strand, within MCAODC_19810at 788.213 kb on + strand, within MCAODC_19810at 788.214 kb on - strand, within MCAODC_19810at 788.214 kb on - strand, within MCAODC_19810at 788.248 kb on + strand, within MCAODC_19810at 788.248 kb on + strand, within MCAODC_19810at 788.257 kb on - strand, within MCAODC_19810at 788.269 kb on + strand, within MCAODC_19810at 788.326 kb on + strand, within MCAODC_19810at 788.346 kb on + strand, within MCAODC_19810at 788.448 kb on - strandat 788.470 kb on - strandat 788.511 kb on + strand, within MCAODC_19815at 788.511 kb on + strand, within MCAODC_19815at 788.512 kb on - strand, within MCAODC_19815at 788.584 kb on - strand, within MCAODC_19815at 788.609 kb on + strand, within MCAODC_19815at 788.616 kb on + strand, within MCAODC_19815at 788.616 kb on + strand, within MCAODC_19815at 788.616 kb on + strand, within MCAODC_19815at 788.617 kb on - strand, within MCAODC_19815at 788.617 kb on - strand, within MCAODC_19815at 788.617 kb on - strand, within MCAODC_19815at 788.620 kb on + strand, within MCAODC_19815at 788.751 kb on + strand, within MCAODC_19815at 788.751 kb on + strand, within MCAODC_19815at 788.752 kb on - strand, within MCAODC_19815at 788.758 kb on - strand, within MCAODC_19815at 788.766 kb on - strand, within MCAODC_19815at 788.784 kb on + strand, within MCAODC_19815at 788.850 kb on + strand, within MCAODC_19815at 788.851 kb on - strand, within MCAODC_19815at 788.860 kb on + strand, within MCAODC_19815at 788.884 kb on + strand, within MCAODC_19815at 788.884 kb on + strand, within MCAODC_19815at 788.884 kb on + strand, within MCAODC_19815at 788.893 kb on + strand, within MCAODC_19815at 789.016 kb on - strandat 789.155 kb on - strandat 789.316 kb on - strandat 789.367 kb on + strandat 789.458 kb on + strandat 789.459 kb on - strandat 789.544 kb on + strandat 789.560 kb on + strandat 789.670 kb on - strand, within hchAat 789.830 kb on - strand, within hchAat 789.830 kb on - strand, within hchAat 789.898 kb on + strand, within hchAat 789.898 kb on + strand, within hchAat 789.906 kb on + strand, within hchAat 789.952 kb on - strand, within hchA

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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787,762 + +1.2
787,931 + MCAODC_19810 0.20 -0.7
787,948 + MCAODC_19810 0.22 +0.8
787,971 - MCAODC_19810 0.26 -0.6
788,042 - MCAODC_19810 0.37 -0.5
788,078 - MCAODC_19810 0.42 +0.9
788,128 + MCAODC_19810 0.50 -1.3
788,138 + MCAODC_19810 0.52 -0.1
788,146 + MCAODC_19810 0.53 +0.0
788,147 - MCAODC_19810 0.53 -0.5
788,151 - MCAODC_19810 0.54 +0.2
788,160 + MCAODC_19810 0.55 -1.0
788,162 + MCAODC_19810 0.55 -1.0
788,162 + MCAODC_19810 0.55 -3.4
788,162 + MCAODC_19810 0.55 +0.6
788,169 + MCAODC_19810 0.56 +0.0
788,209 + MCAODC_19810 0.63 +1.6
788,209 + MCAODC_19810 0.63 +1.3
788,209 + MCAODC_19810 0.63 +1.5
788,213 + MCAODC_19810 0.63 +0.5
788,213 + MCAODC_19810 0.63 +0.0
788,213 + MCAODC_19810 0.63 +2.1
788,214 - MCAODC_19810 0.63 -0.5
788,214 - MCAODC_19810 0.63 +0.2
788,248 + MCAODC_19810 0.69 -0.3
788,248 + MCAODC_19810 0.69 -0.1
788,257 - MCAODC_19810 0.70 +0.2
788,269 + MCAODC_19810 0.72 +0.1
788,326 + MCAODC_19810 0.81 -0.3
788,346 + MCAODC_19810 0.84 -1.4
788,448 - +0.0
788,470 - -0.3
788,511 + MCAODC_19815 0.16 -0.2
788,511 + MCAODC_19815 0.16 -0.0
788,512 - MCAODC_19815 0.17 +1.6
788,584 - MCAODC_19815 0.29 -0.5
788,609 + MCAODC_19815 0.34 -2.7
788,616 + MCAODC_19815 0.35 +0.0
788,616 + MCAODC_19815 0.35 +1.1
788,616 + MCAODC_19815 0.35 +1.2
788,617 - MCAODC_19815 0.35 +0.8
788,617 - MCAODC_19815 0.35 -0.8
788,617 - MCAODC_19815 0.35 +2.5
788,620 + MCAODC_19815 0.35 +0.7
788,751 + MCAODC_19815 0.58 -0.3
788,751 + MCAODC_19815 0.58 -0.6
788,752 - MCAODC_19815 0.58 +0.4
788,758 - MCAODC_19815 0.59 -3.0
788,766 - MCAODC_19815 0.61 +0.4
788,784 + MCAODC_19815 0.64 +1.2
788,850 + MCAODC_19815 0.75 -0.3
788,851 - MCAODC_19815 0.76 -1.5
788,860 + MCAODC_19815 0.77 -2.4
788,884 + MCAODC_19815 0.81 +0.2
788,884 + MCAODC_19815 0.81 -1.5
788,884 + MCAODC_19815 0.81 -1.5
788,893 + MCAODC_19815 0.83 -1.4
789,016 - +0.1
789,155 - -0.2
789,316 - +0.2
789,367 + +0.9
789,458 + -1.9
789,459 - +0.0
789,544 + -0.4
789,560 + -0.8
789,670 - hchA MCAODC_19820 0.10 -1.6
789,830 - hchA MCAODC_19820 0.29 -0.6
789,830 - hchA MCAODC_19820 0.29 +2.2
789,898 + hchA MCAODC_19820 0.37 -1.3
789,898 + hchA MCAODC_19820 0.37 -0.3
789,906 + hchA MCAODC_19820 0.38 -0.5
789,952 - hchA MCAODC_19820 0.43 +0.0

Or see this region's nucleotide sequence