Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flgL and fliD are separated by 265 nucleotides fliD and fliS are separated by 24 nucleotides fliS and fliT overlap by 1 nucleotides fliT and amyA are separated by 77 nucleotides
MCAODC_19615: flgL - flagellin FliC, at 753,650 to 755,407
flgL
MCAODC_19620: fliD - flagellar filament capping protein FliD, at 755,673 to 757,070
fliD
MCAODC_19625: fliS - flagellar export chaperone FliS, at 757,095 to 757,505
fliS
MCAODC_19630: fliT - flagella biosynthesis regulatory protein FliT, at 757,505 to 757,870
fliT
MCAODC_19635: amyA - alpha-amylase, at 757,948 to 759,435
amyA
Position (kb) 755
756
757
758 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 754.696 kb on - strand, within flgL at 754.696 kb on - strand, within flgL at 754.696 kb on - strand, within flgL at 754.696 kb on - strand, within flgL at 754.696 kb on - strand, within flgL at 754.696 kb on - strand, within flgL at 754.696 kb on - strand, within flgL at 754.700 kb on - strand, within flgL at 754.702 kb on - strand, within flgL at 754.702 kb on - strand, within flgL at 754.763 kb on - strand, within flgL at 754.767 kb on - strand, within flgL at 754.767 kb on - strand, within flgL at 754.865 kb on - strand, within flgL at 754.868 kb on - strand, within flgL at 754.868 kb on - strand, within flgL at 754.871 kb on - strand, within flgL at 754.884 kb on - strand, within flgL at 754.884 kb on - strand, within flgL at 754.909 kb on + strand, within flgL at 755.098 kb on + strand, within flgL at 755.135 kb on - strand, within flgL at 755.142 kb on - strand, within flgL at 755.234 kb on - strand at 755.239 kb on + strand at 755.255 kb on - strand at 755.297 kb on - strand at 755.357 kb on - strand at 755.360 kb on - strand at 755.390 kb on - strand at 755.393 kb on - strand at 755.420 kb on + strand at 755.440 kb on - strand at 755.554 kb on - strand at 755.573 kb on - strand at 755.645 kb on + strand at 755.659 kb on + strand at 755.717 kb on - strand at 755.811 kb on + strand at 755.856 kb on - strand, within fliD at 756.089 kb on + strand, within fliD at 756.112 kb on + strand, within fliD at 756.276 kb on - strand, within fliD at 756.510 kb on - strand, within fliD at 756.520 kb on + strand, within fliD at 756.525 kb on - strand, within fliD at 756.525 kb on - strand, within fliD at 756.653 kb on + strand, within fliD at 756.656 kb on + strand, within fliD at 756.656 kb on + strand, within fliD at 756.656 kb on + strand, within fliD at 756.656 kb on + strand, within fliD at 756.675 kb on + strand, within fliD at 756.781 kb on + strand, within fliD at 756.920 kb on + strand, within fliD at 756.921 kb on - strand, within fliD at 757.029 kb on + strand at 757.034 kb on - strand at 757.058 kb on + strand at 757.058 kb on + strand at 757.098 kb on + strand at 757.122 kb on + strand at 757.122 kb on + strand at 757.359 kb on + strand, within fliS at 757.359 kb on + strand, within fliS at 757.361 kb on + strand, within fliS at 757.361 kb on + strand, within fliS at 757.361 kb on + strand, within fliS at 757.361 kb on + strand, within fliS at 757.361 kb on + strand, within fliS at 757.362 kb on - strand, within fliS at 757.362 kb on - strand, within fliS at 757.365 kb on + strand, within fliS at 757.365 kb on + strand, within fliS at 757.365 kb on + strand, within fliS at 757.365 kb on + strand, within fliS at 757.367 kb on + strand, within fliS at 757.367 kb on + strand, within fliS at 757.435 kb on + strand, within fliS at 757.445 kb on + strand, within fliS at 757.524 kb on + strand at 757.527 kb on - strand at 757.569 kb on + strand, within fliT at 757.622 kb on + strand, within fliT at 757.622 kb on + strand, within fliT at 757.622 kb on + strand, within fliT at 757.622 kb on + strand, within fliT at 757.623 kb on - strand, within fliT at 757.737 kb on + strand, within fliT at 757.737 kb on + strand, within fliT at 757.738 kb on - strand, within fliT at 757.920 kb on + strand at 757.920 kb on + strand at 757.920 kb on + strand at 757.920 kb on + strand at 757.920 kb on + strand at 757.921 kb on - strand at 757.954 kb on - strand at 757.968 kb on - strand at 757.968 kb on - strand at 757.968 kb on - strand at 757.987 kb on + strand at 758.052 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 754,696 - flgL MCAODC_19615 0.59 -0.4 754,696 - flgL MCAODC_19615 0.59 +0.0 754,696 - flgL MCAODC_19615 0.59 -0.3 754,696 - flgL MCAODC_19615 0.59 +0.5 754,696 - flgL MCAODC_19615 0.59 +0.9 754,696 - flgL MCAODC_19615 0.59 -0.1 754,696 - flgL MCAODC_19615 0.59 +0.7 754,700 - flgL MCAODC_19615 0.60 -1.0 754,702 - flgL MCAODC_19615 0.60 -0.1 754,702 - flgL MCAODC_19615 0.60 +0.1 754,763 - flgL MCAODC_19615 0.63 +0.6 754,767 - flgL MCAODC_19615 0.64 -0.5 754,767 - flgL MCAODC_19615 0.64 -0.3 754,865 - flgL MCAODC_19615 0.69 -2.7 754,868 - flgL MCAODC_19615 0.69 -1.1 754,868 - flgL MCAODC_19615 0.69 -2.3 754,871 - flgL MCAODC_19615 0.69 -2.7 754,884 - flgL MCAODC_19615 0.70 -0.8 754,884 - flgL MCAODC_19615 0.70 -2.0 754,909 + flgL MCAODC_19615 0.72 -1.6 755,098 + flgL MCAODC_19615 0.82 +1.8 755,135 - flgL MCAODC_19615 0.84 +0.5 755,142 - flgL MCAODC_19615 0.85 -2.1 755,234 - +0.0 755,239 + +1.1 755,255 - -2.1 755,297 - -0.4 755,357 - +0.6 755,360 - +0.4 755,390 - +1.1 755,393 - +0.8 755,420 + -2.4 755,440 - +1.4 755,554 - -1.3 755,573 - +1.0 755,645 + -0.3 755,659 + +0.4 755,717 - +0.8 755,811 + -0.6 755,856 - fliD MCAODC_19620 0.13 -0.6 756,089 + fliD MCAODC_19620 0.30 -0.1 756,112 + fliD MCAODC_19620 0.31 -1.8 756,276 - fliD MCAODC_19620 0.43 -1.1 756,510 - fliD MCAODC_19620 0.60 +0.0 756,520 + fliD MCAODC_19620 0.61 -0.0 756,525 - fliD MCAODC_19620 0.61 -1.1 756,525 - fliD MCAODC_19620 0.61 +1.6 756,653 + fliD MCAODC_19620 0.70 -0.5 756,656 + fliD MCAODC_19620 0.70 -2.0 756,656 + fliD MCAODC_19620 0.70 -2.1 756,656 + fliD MCAODC_19620 0.70 -0.4 756,656 + fliD MCAODC_19620 0.70 -0.9 756,675 + fliD MCAODC_19620 0.72 -0.3 756,781 + fliD MCAODC_19620 0.79 +1.7 756,920 + fliD MCAODC_19620 0.89 +0.2 756,921 - fliD MCAODC_19620 0.89 +1.5 757,029 + -0.7 757,034 - -0.1 757,058 + +0.4 757,058 + +0.0 757,098 + -0.6 757,122 + -0.2 757,122 + +0.6 757,359 + fliS MCAODC_19625 0.64 +0.8 757,359 + fliS MCAODC_19625 0.64 +0.4 757,361 + fliS MCAODC_19625 0.65 +0.8 757,361 + fliS MCAODC_19625 0.65 +0.4 757,361 + fliS MCAODC_19625 0.65 +0.0 757,361 + fliS MCAODC_19625 0.65 +0.0 757,361 + fliS MCAODC_19625 0.65 -0.6 757,362 - fliS MCAODC_19625 0.65 -1.9 757,362 - fliS MCAODC_19625 0.65 +0.2 757,365 + fliS MCAODC_19625 0.66 -2.8 757,365 + fliS MCAODC_19625 0.66 +0.4 757,365 + fliS MCAODC_19625 0.66 -0.5 757,365 + fliS MCAODC_19625 0.66 -0.8 757,367 + fliS MCAODC_19625 0.66 +0.4 757,367 + fliS MCAODC_19625 0.66 -2.4 757,435 + fliS MCAODC_19625 0.83 -0.2 757,445 + fliS MCAODC_19625 0.85 +0.3 757,524 + -1.1 757,527 - +1.0 757,569 + fliT MCAODC_19630 0.17 +3.8 757,622 + fliT MCAODC_19630 0.32 +0.6 757,622 + fliT MCAODC_19630 0.32 +0.2 757,622 + fliT MCAODC_19630 0.32 -0.5 757,622 + fliT MCAODC_19630 0.32 +0.0 757,623 - fliT MCAODC_19630 0.32 +0.1 757,737 + fliT MCAODC_19630 0.63 +0.6 757,737 + fliT MCAODC_19630 0.63 +1.0 757,738 - fliT MCAODC_19630 0.64 -2.1 757,920 + -2.1 757,920 + +0.7 757,920 + +1.0 757,920 + -0.3 757,920 + -0.5 757,921 - +2.0 757,954 - -0.3 757,968 - -0.0 757,968 - +0.4 757,968 - +0.5 757,987 + -3.1 758,052 + -2.1
Or see this region's nucleotide sequence