Strain Fitness in Escherichia coli ECRC101 around MCAODC_19365

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyecR and ftnA are separated by 170 nucleotidesftnA and yecH are separated by 36 nucleotidesyecH and tyrP are separated by 191 nucleotides MCAODC_19355: yecR - Uncharacterized protein YecR, at 718,641 to 718,964 yecR MCAODC_19360: ftnA - non-heme ferritin, at 719,135 to 719,632 ftnA MCAODC_19365: yecH - Uncharacterized protein YecH, at 719,669 to 719,908 yecH MCAODC_19370: tyrP - tyrosine transporter TyrP, at 720,100 to 721,311 tyrP Position (kb) 719 720Strain fitness (log2 ratio) -1 0 1 2at 718.669 kb on + strandat 718.672 kb on + strandat 718.688 kb on + strand, within yecRat 718.688 kb on + strand, within yecRat 718.736 kb on + strand, within yecRat 718.741 kb on + strand, within yecRat 718.741 kb on + strand, within yecRat 718.791 kb on + strand, within yecRat 718.898 kb on - strand, within yecRat 718.908 kb on - strand, within yecRat 718.927 kb on - strand, within yecRat 718.972 kb on - strandat 719.061 kb on - strandat 719.112 kb on + strandat 719.131 kb on + strandat 719.190 kb on - strand, within ftnAat 719.204 kb on + strand, within ftnAat 719.231 kb on + strand, within ftnAat 719.231 kb on + strand, within ftnAat 719.232 kb on - strand, within ftnAat 719.236 kb on + strand, within ftnAat 719.421 kb on + strand, within ftnAat 719.501 kb on + strand, within ftnAat 719.551 kb on + strand, within ftnAat 719.556 kb on + strand, within ftnAat 719.557 kb on - strand, within ftnAat 719.557 kb on - strand, within ftnAat 719.589 kb on - strandat 719.723 kb on - strand, within yecHat 719.849 kb on - strand, within yecHat 719.900 kb on - strandat 720.074 kb on + strandat 720.075 kb on - strandat 720.075 kb on - strandat 720.204 kb on + strandat 720.257 kb on + strand, within tyrPat 720.271 kb on + strand, within tyrPat 720.368 kb on + strand, within tyrPat 720.368 kb on + strand, within tyrPat 720.373 kb on + strand, within tyrPat 720.373 kb on + strand, within tyrPat 720.391 kb on + strand, within tyrPat 720.391 kb on + strand, within tyrPat 720.391 kb on + strand, within tyrPat 720.391 kb on + strand, within tyrPat 720.391 kb on + strand, within tyrPat 720.444 kb on + strand, within tyrPat 720.444 kb on + strand, within tyrPat 720.584 kb on + strand, within tyrPat 720.600 kb on + strand, within tyrPat 720.620 kb on + strand, within tyrPat 720.715 kb on + strand, within tyrPat 720.735 kb on + strand, within tyrPat 720.784 kb on + strand, within tyrP

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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718,669 + -1.3
718,672 + +0.4
718,688 + yecR MCAODC_19355 0.15 -1.3
718,688 + yecR MCAODC_19355 0.15 +1.2
718,736 + yecR MCAODC_19355 0.29 +0.5
718,741 + yecR MCAODC_19355 0.31 +1.9
718,741 + yecR MCAODC_19355 0.31 -0.5
718,791 + yecR MCAODC_19355 0.46 -0.5
718,898 - yecR MCAODC_19355 0.79 +0.3
718,908 - yecR MCAODC_19355 0.82 +0.1
718,927 - yecR MCAODC_19355 0.88 -0.9
718,972 - -0.7
719,061 - -0.0
719,112 + +0.1
719,131 + +0.2
719,190 - ftnA MCAODC_19360 0.11 +0.3
719,204 + ftnA MCAODC_19360 0.14 +0.4
719,231 + ftnA MCAODC_19360 0.19 +0.2
719,231 + ftnA MCAODC_19360 0.19 +0.2
719,232 - ftnA MCAODC_19360 0.19 +1.2
719,236 + ftnA MCAODC_19360 0.20 +0.2
719,421 + ftnA MCAODC_19360 0.57 +0.4
719,501 + ftnA MCAODC_19360 0.73 +0.8
719,551 + ftnA MCAODC_19360 0.84 -0.4
719,556 + ftnA MCAODC_19360 0.85 -0.3
719,557 - ftnA MCAODC_19360 0.85 -0.9
719,557 - ftnA MCAODC_19360 0.85 -0.6
719,589 - -1.5
719,723 - yecH MCAODC_19365 0.23 -0.9
719,849 - yecH MCAODC_19365 0.75 -0.6
719,900 - +0.7
720,074 + -0.3
720,075 - -0.5
720,075 - +1.0
720,204 + -0.3
720,257 + tyrP MCAODC_19370 0.13 -0.3
720,271 + tyrP MCAODC_19370 0.14 -0.1
720,368 + tyrP MCAODC_19370 0.22 +0.1
720,368 + tyrP MCAODC_19370 0.22 +1.0
720,373 + tyrP MCAODC_19370 0.23 +0.5
720,373 + tyrP MCAODC_19370 0.23 +0.0
720,391 + tyrP MCAODC_19370 0.24 +0.5
720,391 + tyrP MCAODC_19370 0.24 +0.8
720,391 + tyrP MCAODC_19370 0.24 -1.1
720,391 + tyrP MCAODC_19370 0.24 +1.6
720,391 + tyrP MCAODC_19370 0.24 +0.8
720,444 + tyrP MCAODC_19370 0.28 +0.1
720,444 + tyrP MCAODC_19370 0.28 +0.0
720,584 + tyrP MCAODC_19370 0.40 +0.3
720,600 + tyrP MCAODC_19370 0.41 +0.4
720,620 + tyrP MCAODC_19370 0.43 -0.3
720,715 + tyrP MCAODC_19370 0.51 -1.6
720,735 + tyrP MCAODC_19370 0.52 +1.1
720,784 + tyrP MCAODC_19370 0.56 +0.1

Or see this region's nucleotide sequence