Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yoaA and yoaB are separated by 128 nucleotides yoaB and yoaC are separated by 421 nucleotides yoaC and yoaH are separated by 119 nucleotides
MCAODC_18830: yoaA - putative ATP-dependent DNA helicase YoaA, at 622,422 to 624,332
yoaA
MCAODC_18835: yoaB - RutC family protein YoaB, at 624,461 to 624,808
yoaB
MCAODC_18840: yoaC - Uncharacterized protein YoaC, at 625,230 to 625,529
yoaC
MCAODC_18845: yoaH - YoaH family protein, at 625,649 to 625,828
yoaH
Position (kb) 624
625 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 623.806 kb on + strand, within yoaA at 623.807 kb on - strand, within yoaA at 624.016 kb on + strand, within yoaA at 624.094 kb on + strand, within yoaA at 624.170 kb on - strand at 624.170 kb on - strand at 624.176 kb on - strand at 624.278 kb on + strand at 624.335 kb on + strand at 624.362 kb on - strand at 624.362 kb on - strand at 624.508 kb on - strand, within yoaB at 624.533 kb on + strand, within yoaB at 624.632 kb on - strand, within yoaB at 624.694 kb on + strand, within yoaB at 624.774 kb on - strand at 624.827 kb on - strand at 624.956 kb on - strand at 624.959 kb on + strand at 624.973 kb on + strand at 624.973 kb on + strand at 624.973 kb on + strand at 625.044 kb on - strand at 625.153 kb on - strand at 625.243 kb on + strand at 625.243 kb on + strand at 625.247 kb on + strand at 625.248 kb on - strand at 625.280 kb on - strand, within yoaC at 625.331 kb on + strand, within yoaC at 625.498 kb on - strand, within yoaC at 625.498 kb on - strand, within yoaC at 625.499 kb on + strand, within yoaC at 625.499 kb on + strand, within yoaC at 625.499 kb on + strand, within yoaC at 625.499 kb on + strand, within yoaC at 625.499 kb on + strand, within yoaC at 625.499 kb on + strand, within yoaC at 625.541 kb on - strand at 625.548 kb on + strand at 625.548 kb on + strand at 625.548 kb on + strand at 625.579 kb on - strand at 625.622 kb on - strand at 625.622 kb on - strand at 625.642 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 623,806 + yoaA MCAODC_18830 0.72 -1.0 623,807 - yoaA MCAODC_18830 0.72 +1.2 624,016 + yoaA MCAODC_18830 0.83 -2.1 624,094 + yoaA MCAODC_18830 0.87 -2.0 624,170 - -0.9 624,170 - -0.2 624,176 - +2.0 624,278 + -2.6 624,335 + +0.1 624,362 - +0.3 624,362 - +0.0 624,508 - yoaB MCAODC_18835 0.14 +0.5 624,533 + yoaB MCAODC_18835 0.21 -1.5 624,632 - yoaB MCAODC_18835 0.49 +0.1 624,694 + yoaB MCAODC_18835 0.67 -3.0 624,774 - +1.8 624,827 - -0.6 624,956 - -0.8 624,959 + +0.1 624,973 + -0.5 624,973 + +1.6 624,973 + +1.8 625,044 - -1.6 625,153 - +1.3 625,243 + -2.6 625,243 + -1.6 625,247 + -0.3 625,248 - +0.7 625,280 - yoaC MCAODC_18840 0.17 -0.1 625,331 + yoaC MCAODC_18840 0.34 +0.8 625,498 - yoaC MCAODC_18840 0.89 +1.5 625,498 - yoaC MCAODC_18840 0.89 -0.6 625,499 + yoaC MCAODC_18840 0.90 -1.2 625,499 + yoaC MCAODC_18840 0.90 -0.6 625,499 + yoaC MCAODC_18840 0.90 +1.0 625,499 + yoaC MCAODC_18840 0.90 +0.5 625,499 + yoaC MCAODC_18840 0.90 -0.1 625,499 + yoaC MCAODC_18840 0.90 +0.2 625,541 - +1.2 625,548 + +0.2 625,548 + -0.6 625,548 + -2.9 625,579 - -2.2 625,622 - -0.0 625,622 - -1.0 625,642 + -1.5
Or see this region's nucleotide sequence