Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroH and ydiE are separated by 131 nucleotides ydiE and selO are separated by 3 nucleotides selO and ydiV are separated by 62 nucleotides
MCAODC_18275: aroH - 3-deoxy-7-phosphoheptulonate synthase AroH, at 517,417 to 518,463
aroH
MCAODC_18280: ydiE - Uncharacterized protein YdiE, at 518,595 to 518,786
ydiE
MCAODC_18285: selO - protein adenylyltransferase SelO, at 518,790 to 520,226
selO
MCAODC_18290: ydiV - anti-FlhDC factor, at 520,289 to 521,002
ydiV
Position (kb) 518
519
520
521 Strain fitness (log2 ratio) -2
-1
0
1
2 at 517.961 kb on + strand, within aroH at 518.034 kb on + strand, within aroH at 518.034 kb on + strand, within aroH at 518.074 kb on + strand, within aroH at 518.074 kb on + strand, within aroH at 518.074 kb on + strand, within aroH at 518.106 kb on + strand, within aroH at 518.106 kb on + strand, within aroH at 518.106 kb on + strand, within aroH at 518.109 kb on + strand, within aroH at 518.109 kb on + strand, within aroH at 518.110 kb on - strand, within aroH at 518.110 kb on - strand, within aroH at 518.220 kb on + strand, within aroH at 518.266 kb on - strand, within aroH at 518.371 kb on + strand at 518.602 kb on - strand at 518.845 kb on + strand at 518.845 kb on + strand at 518.846 kb on - strand at 519.193 kb on - strand, within selO at 519.278 kb on - strand, within selO at 519.278 kb on - strand, within selO at 519.307 kb on - strand, within selO at 519.346 kb on - strand, within selO at 519.346 kb on - strand, within selO at 519.431 kb on - strand, within selO at 519.495 kb on - strand, within selO at 519.551 kb on + strand, within selO at 519.552 kb on - strand, within selO at 519.584 kb on - strand, within selO at 519.780 kb on - strand, within selO at 519.855 kb on + strand, within selO at 519.859 kb on - strand, within selO at 519.926 kb on + strand, within selO at 519.958 kb on - strand, within selO at 520.124 kb on + strand at 520.127 kb on + strand at 520.149 kb on - strand at 520.153 kb on - strand at 520.153 kb on - strand at 520.176 kb on - strand at 520.178 kb on - strand at 520.178 kb on - strand at 520.227 kb on - strand at 520.249 kb on - strand at 520.268 kb on - strand at 521.061 kb on - strand at 521.150 kb on - strand at 521.192 kb on - strand at 521.196 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 517,961 + aroH MCAODC_18275 0.52 +1.5 518,034 + aroH MCAODC_18275 0.59 +2.0 518,034 + aroH MCAODC_18275 0.59 -2.1 518,074 + aroH MCAODC_18275 0.63 +0.6 518,074 + aroH MCAODC_18275 0.63 +0.6 518,074 + aroH MCAODC_18275 0.63 +0.3 518,106 + aroH MCAODC_18275 0.66 +0.4 518,106 + aroH MCAODC_18275 0.66 -0.2 518,106 + aroH MCAODC_18275 0.66 +1.6 518,109 + aroH MCAODC_18275 0.66 -1.3 518,109 + aroH MCAODC_18275 0.66 -0.0 518,110 - aroH MCAODC_18275 0.66 -1.2 518,110 - aroH MCAODC_18275 0.66 -2.2 518,220 + aroH MCAODC_18275 0.77 -0.2 518,266 - aroH MCAODC_18275 0.81 -2.0 518,371 + +0.3 518,602 - -2.4 518,845 + -0.6 518,845 + +1.0 518,846 - +0.9 519,193 - selO MCAODC_18285 0.28 +0.8 519,278 - selO MCAODC_18285 0.34 +0.3 519,278 - selO MCAODC_18285 0.34 +0.6 519,307 - selO MCAODC_18285 0.36 +0.1 519,346 - selO MCAODC_18285 0.39 +0.5 519,346 - selO MCAODC_18285 0.39 -0.7 519,431 - selO MCAODC_18285 0.45 -0.7 519,495 - selO MCAODC_18285 0.49 -1.1 519,551 + selO MCAODC_18285 0.53 +1.2 519,552 - selO MCAODC_18285 0.53 +2.3 519,584 - selO MCAODC_18285 0.55 +0.4 519,780 - selO MCAODC_18285 0.69 -2.4 519,855 + selO MCAODC_18285 0.74 -0.6 519,859 - selO MCAODC_18285 0.74 +0.5 519,926 + selO MCAODC_18285 0.79 -1.1 519,958 - selO MCAODC_18285 0.81 +2.0 520,124 + +1.4 520,127 + -0.6 520,149 - +0.2 520,153 - +0.6 520,153 - +0.2 520,176 - -0.0 520,178 - +1.3 520,178 - +0.9 520,227 - +0.2 520,249 - +0.5 520,268 - -1.4 521,061 - -0.5 521,150 - -0.5 521,192 - +0.9 521,196 + +1.2
Or see this region's nucleotide sequence