Strain Fitness in Escherichia coli ECRC101 around MCAODC_17865

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrsxA and rsxB overlap by 1 nucleotidesrsxB and rsxC overlap by 8 nucleotidesrsxC and rsxD are separated by 0 nucleotides MCAODC_17855: rsxA - electron transport complex subunit RsxA, at 434,667 to 435,248 rsxA MCAODC_17860: rsxB - electron transport complex subunit RsxB, at 435,248 to 435,826 rsxB MCAODC_17865: rsxC - electron transport complex subunit RsxC, at 435,819 to 438,137 rsxC MCAODC_17870: rsxD - electron transport complex subunit RsxD, at 438,138 to 439,196 rsxD Position (kb) 435 436 437 438 439Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 434.964 kb on + strand, within rsxAat 434.993 kb on + strand, within rsxAat 435.187 kb on + strand, within rsxAat 435.203 kb on + strandat 435.204 kb on - strandat 435.256 kb on + strandat 435.446 kb on - strand, within rsxBat 435.592 kb on + strand, within rsxBat 435.592 kb on + strand, within rsxBat 435.610 kb on + strand, within rsxBat 435.616 kb on + strand, within rsxBat 435.616 kb on + strand, within rsxBat 435.702 kb on + strand, within rsxBat 436.079 kb on + strand, within rsxCat 436.145 kb on + strand, within rsxCat 436.307 kb on + strand, within rsxCat 436.326 kb on - strand, within rsxCat 436.326 kb on - strand, within rsxCat 436.350 kb on + strand, within rsxCat 436.351 kb on - strand, within rsxCat 436.351 kb on - strand, within rsxCat 436.424 kb on + strand, within rsxCat 436.463 kb on + strand, within rsxCat 436.570 kb on + strand, within rsxCat 436.570 kb on + strand, within rsxCat 436.575 kb on + strand, within rsxCat 436.575 kb on + strand, within rsxCat 436.630 kb on + strand, within rsxCat 436.630 kb on + strand, within rsxCat 436.633 kb on + strand, within rsxCat 436.656 kb on + strand, within rsxCat 436.656 kb on + strand, within rsxCat 436.850 kb on + strand, within rsxCat 436.850 kb on + strand, within rsxCat 436.850 kb on + strand, within rsxCat 436.887 kb on - strand, within rsxCat 437.007 kb on + strand, within rsxCat 437.008 kb on - strand, within rsxCat 437.105 kb on + strand, within rsxCat 437.105 kb on + strand, within rsxCat 437.121 kb on + strand, within rsxCat 437.285 kb on + strand, within rsxCat 437.340 kb on - strand, within rsxCat 437.348 kb on + strand, within rsxCat 437.349 kb on - strand, within rsxCat 437.390 kb on + strand, within rsxCat 437.391 kb on - strand, within rsxCat 437.453 kb on + strand, within rsxCat 437.453 kb on + strand, within rsxCat 437.453 kb on + strand, within rsxCat 437.642 kb on + strand, within rsxCat 438.165 kb on + strandat 438.166 kb on - strandat 438.197 kb on + strandat 438.328 kb on + strand, within rsxDat 438.329 kb on - strand, within rsxDat 438.362 kb on + strand, within rsxDat 438.362 kb on + strand, within rsxDat 438.362 kb on + strand, within rsxDat 438.397 kb on + strand, within rsxDat 438.402 kb on - strand, within rsxDat 438.402 kb on - strand, within rsxDat 438.474 kb on + strand, within rsxDat 438.613 kb on + strand, within rsxDat 438.653 kb on + strand, within rsxDat 438.664 kb on + strand, within rsxDat 438.707 kb on + strand, within rsxDat 438.752 kb on + strand, within rsxDat 438.806 kb on - strand, within rsxDat 438.841 kb on + strand, within rsxDat 438.841 kb on + strand, within rsxDat 438.842 kb on - strand, within rsxDat 438.883 kb on + strand, within rsxDat 438.886 kb on + strand, within rsxDat 439.066 kb on + strand, within rsxDat 439.066 kb on + strand, within rsxDat 439.066 kb on + strand, within rsxD

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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434,964 + rsxA MCAODC_17855 0.51 -0.0
434,993 + rsxA MCAODC_17855 0.56 +0.2
435,187 + rsxA MCAODC_17855 0.89 -0.8
435,203 + -1.6
435,204 - -2.7
435,256 + +0.7
435,446 - rsxB MCAODC_17860 0.34 +0.2
435,592 + rsxB MCAODC_17860 0.59 -0.6
435,592 + rsxB MCAODC_17860 0.59 -1.3
435,610 + rsxB MCAODC_17860 0.63 -0.6
435,616 + rsxB MCAODC_17860 0.64 +0.0
435,616 + rsxB MCAODC_17860 0.64 +0.7
435,702 + rsxB MCAODC_17860 0.78 -1.2
436,079 + rsxC MCAODC_17865 0.11 -1.2
436,145 + rsxC MCAODC_17865 0.14 -2.0
436,307 + rsxC MCAODC_17865 0.21 -2.9
436,326 - rsxC MCAODC_17865 0.22 -1.6
436,326 - rsxC MCAODC_17865 0.22 +0.2
436,350 + rsxC MCAODC_17865 0.23 -0.1
436,351 - rsxC MCAODC_17865 0.23 +0.4
436,351 - rsxC MCAODC_17865 0.23 +1.7
436,424 + rsxC MCAODC_17865 0.26 -1.1
436,463 + rsxC MCAODC_17865 0.28 -0.7
436,570 + rsxC MCAODC_17865 0.32 -2.2
436,570 + rsxC MCAODC_17865 0.32 -0.1
436,575 + rsxC MCAODC_17865 0.33 -1.0
436,575 + rsxC MCAODC_17865 0.33 -0.0
436,630 + rsxC MCAODC_17865 0.35 -2.4
436,630 + rsxC MCAODC_17865 0.35 +1.2
436,633 + rsxC MCAODC_17865 0.35 -2.3
436,656 + rsxC MCAODC_17865 0.36 -1.0
436,656 + rsxC MCAODC_17865 0.36 -1.2
436,850 + rsxC MCAODC_17865 0.44 +0.4
436,850 + rsxC MCAODC_17865 0.44 -0.4
436,850 + rsxC MCAODC_17865 0.44 +0.6
436,887 - rsxC MCAODC_17865 0.46 -0.6
437,007 + rsxC MCAODC_17865 0.51 -0.0
437,008 - rsxC MCAODC_17865 0.51 -2.1
437,105 + rsxC MCAODC_17865 0.55 +0.6
437,105 + rsxC MCAODC_17865 0.55 -1.0
437,121 + rsxC MCAODC_17865 0.56 -0.2
437,285 + rsxC MCAODC_17865 0.63 -0.1
437,340 - rsxC MCAODC_17865 0.66 -0.3
437,348 + rsxC MCAODC_17865 0.66 -2.8
437,349 - rsxC MCAODC_17865 0.66 -1.6
437,390 + rsxC MCAODC_17865 0.68 +0.5
437,391 - rsxC MCAODC_17865 0.68 -0.5
437,453 + rsxC MCAODC_17865 0.70 +0.4
437,453 + rsxC MCAODC_17865 0.70 -1.3
437,453 + rsxC MCAODC_17865 0.70 -1.9
437,642 + rsxC MCAODC_17865 0.79 -2.0
438,165 + +0.6
438,166 - -1.5
438,197 + -0.9
438,328 + rsxD MCAODC_17870 0.18 -0.1
438,329 - rsxD MCAODC_17870 0.18 +4.3
438,362 + rsxD MCAODC_17870 0.21 +0.1
438,362 + rsxD MCAODC_17870 0.21 +1.2
438,362 + rsxD MCAODC_17870 0.21 -0.0
438,397 + rsxD MCAODC_17870 0.24 +0.8
438,402 - rsxD MCAODC_17870 0.25 -1.5
438,402 - rsxD MCAODC_17870 0.25 +0.8
438,474 + rsxD MCAODC_17870 0.32 +0.3
438,613 + rsxD MCAODC_17870 0.45 +2.0
438,653 + rsxD MCAODC_17870 0.49 -0.9
438,664 + rsxD MCAODC_17870 0.50 +0.5
438,707 + rsxD MCAODC_17870 0.54 +1.2
438,752 + rsxD MCAODC_17870 0.58 -0.5
438,806 - rsxD MCAODC_17870 0.63 +0.4
438,841 + rsxD MCAODC_17870 0.66 -0.2
438,841 + rsxD MCAODC_17870 0.66 -0.7
438,842 - rsxD MCAODC_17870 0.66 -2.4
438,883 + rsxD MCAODC_17870 0.70 -1.1
438,886 + rsxD MCAODC_17870 0.71 -0.8
439,066 + rsxD MCAODC_17870 0.88 +0.2
439,066 + rsxD MCAODC_17870 0.88 +0.7
439,066 + rsxD MCAODC_17870 0.88 +1.0

Or see this region's nucleotide sequence