Strain Fitness in Escherichia coli ECRC101 around MCAODC_17655

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdmsB and ynfH are separated by 1 nucleotidesynfH and dmsD are separated by 42 nucleotidesdmsD and clcB are separated by 193 nucleotides MCAODC_17645: dmsB - dimethylsulfoxide reductase subunit B, at 392,061 to 392,678 dmsB MCAODC_17650: ynfH - Anaerobic dimethyl sulfoxide reductase chain YnfH, at 392,680 to 393,534 ynfH MCAODC_17655: dmsD - Tat proofreading chaperone DmsD, at 393,577 to 394,191 dmsD MCAODC_17660: clcB - voltage-gated ClC-type chloride channel ClcB, at 394,385 to 395,641 clcB Position (kb) 393 394 395Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 392.677 kb on - strandat 392.975 kb on + strand, within ynfHat 392.976 kb on - strand, within ynfHat 393.115 kb on - strand, within ynfHat 393.127 kb on - strand, within ynfHat 393.127 kb on - strand, within ynfHat 393.168 kb on - strand, within ynfHat 393.365 kb on + strand, within ynfHat 393.365 kb on + strand, within ynfHat 393.366 kb on - strand, within ynfHat 393.371 kb on + strand, within ynfHat 393.383 kb on + strand, within ynfHat 393.438 kb on + strand, within ynfHat 393.493 kb on + strandat 393.644 kb on - strand, within dmsDat 393.719 kb on + strand, within dmsDat 393.720 kb on - strand, within dmsDat 394.157 kb on + strandat 394.272 kb on + strandat 394.360 kb on - strandat 394.367 kb on + strandat 394.367 kb on + strandat 394.468 kb on - strandat 394.691 kb on - strand, within clcBat 394.717 kb on - strand, within clcBat 394.916 kb on - strand, within clcBat 395.056 kb on + strand, within clcBat 395.062 kb on + strand, within clcBat 395.106 kb on + strand, within clcB

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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392,677 - +0.2
392,975 + ynfH MCAODC_17650 0.35 +1.1
392,976 - ynfH MCAODC_17650 0.35 +0.8
393,115 - ynfH MCAODC_17650 0.51 -1.7
393,127 - ynfH MCAODC_17650 0.52 +0.3
393,127 - ynfH MCAODC_17650 0.52 +0.9
393,168 - ynfH MCAODC_17650 0.57 -1.2
393,365 + ynfH MCAODC_17650 0.80 -0.3
393,365 + ynfH MCAODC_17650 0.80 +0.6
393,366 - ynfH MCAODC_17650 0.80 +0.4
393,371 + ynfH MCAODC_17650 0.81 -0.1
393,383 + ynfH MCAODC_17650 0.82 -2.0
393,438 + ynfH MCAODC_17650 0.89 +1.4
393,493 + -0.9
393,644 - dmsD MCAODC_17655 0.11 +1.1
393,719 + dmsD MCAODC_17655 0.23 +0.0
393,720 - dmsD MCAODC_17655 0.23 -1.0
394,157 + +4.0
394,272 + -0.2
394,360 - +1.2
394,367 + -0.2
394,367 + -0.2
394,468 - -1.2
394,691 - clcB MCAODC_17660 0.24 +0.3
394,717 - clcB MCAODC_17660 0.26 -1.6
394,916 - clcB MCAODC_17660 0.42 +2.0
395,056 + clcB MCAODC_17660 0.53 +1.2
395,062 + clcB MCAODC_17660 0.54 +2.5
395,106 + clcB MCAODC_17660 0.57 +2.0

Or see this region's nucleotide sequence