Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnp-IS3 and tnp-IS3 overlap by 1 nucleotides tnp-IS3 and MCAODC_17590 overlap by 35 nucleotides MCAODC_17590 and MCAODC_17595 are separated by 87 nucleotides MCAODC_17595 and MCAODC_17600 are separated by 34 nucleotides
MCAODC_17580: tnp-IS3 - IS3 family transposase, at 380,457 to 380,783
tnp-IS3
MCAODC_17585: tnp-IS3 - IS3 family transposase, at 380,783 to 381,670
tnp-IS3
MCAODC_17590: MCAODC_17590 - exodeoxyribonuclease VIII, at 381,636 to 383,105
_17590
MCAODC_17595: MCAODC_17595 - DNA-binding protein, at 383,193 to 383,429
_17595
MCAODC_17600: MCAODC_17600 - Integrase, cryptic prophage CP-933P, at 383,464 to 383,619
_17600
Position (kb) 381
382
383
384 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 381.805 kb on - strand, within MCAODC_17590 at 381.805 kb on - strand, within MCAODC_17590 at 382.353 kb on + strand, within MCAODC_17590 at 382.422 kb on - strand, within MCAODC_17590 at 382.608 kb on - strand, within MCAODC_17590 at 383.103 kb on + strand at 383.103 kb on + strand at 383.103 kb on + strand at 383.167 kb on + strand at 383.188 kb on + strand at 383.309 kb on + strand, within MCAODC_17595 at 383.309 kb on + strand, within MCAODC_17595 at 383.309 kb on + strand, within MCAODC_17595 at 383.309 kb on + strand, within MCAODC_17595 at 383.309 kb on + strand, within MCAODC_17595 at 383.310 kb on - strand, within MCAODC_17595 at 383.509 kb on - strand, within MCAODC_17600 at 383.521 kb on + strand, within MCAODC_17600 at 383.523 kb on + strand, within MCAODC_17600 at 383.638 kb on - strand at 383.698 kb on + strand at 383.699 kb on - strand at 383.901 kb on + strand at 383.938 kb on + strand at 383.946 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 381,805 - MCAODC_17590 0.11 -0.5 381,805 - MCAODC_17590 0.11 +1.0 382,353 + MCAODC_17590 0.49 -0.3 382,422 - MCAODC_17590 0.53 +0.4 382,608 - MCAODC_17590 0.66 -0.2 383,103 + +0.6 383,103 + -0.2 383,103 + -1.6 383,167 + -0.7 383,188 + -1.4 383,309 + MCAODC_17595 0.49 +0.8 383,309 + MCAODC_17595 0.49 -1.3 383,309 + MCAODC_17595 0.49 +1.8 383,309 + MCAODC_17595 0.49 +1.8 383,309 + MCAODC_17595 0.49 +0.4 383,310 - MCAODC_17595 0.49 +0.3 383,509 - MCAODC_17600 0.29 -0.0 383,521 + MCAODC_17600 0.37 -3.8 383,523 + MCAODC_17600 0.38 -0.7 383,638 - -0.4 383,698 + -1.0 383,699 - +0.6 383,901 + -0.4 383,938 + +0.1 383,946 + +0.7
Or see this region's nucleotide sequence