Strain Fitness in Escherichia coli ECRC101 around MCAODC_17385

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntymfN and xtmA overlap by 4 nucleotidesxtmA and mcrA are separated by 289 nucleotidesmcrA and MCAODC_17390 are separated by 41 nucleotidesMCAODC_17390 and MCAODC_17395 are separated by 362 nucleotides MCAODC_17375: ymfN - terminase large subunit, at 358,948 to 360,609 ymfN MCAODC_17380: xtmA - terminase small subunit, at 360,606 to 361,169 xtmA MCAODC_17385: mcrA - HNH endonuclease, at 361,459 to 361,824 mcrA MCAODC_17390: MCAODC_17390 - DUF3950 domain-containing protein, at 361,866 to 362,093 _17390 MCAODC_17395: MCAODC_17395 - lysis protein, at 362,456 to 362,923 _17395 Position (kb) 361 362Strain fitness (log2 ratio) -2 -1 0 1at 362.024 kb on - strand, within MCAODC_17390at 362.029 kb on - strand, within MCAODC_17390at 362.029 kb on - strand, within MCAODC_17390at 362.060 kb on + strand, within MCAODC_17390at 362.200 kb on + strandat 362.224 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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362,024 - MCAODC_17390 0.69 -0.2
362,029 - MCAODC_17390 0.71 -0.5
362,029 - MCAODC_17390 0.71 -1.3
362,060 + MCAODC_17390 0.85 -2.0
362,200 + -0.5
362,224 + +1.5

Or see this region's nucleotide sequence